Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30526
(356 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.056
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 2.8
At1g59077.1 68414.m06670 hypothetical protein 27 2.8
At1g58766.1 68414.m06659 hypothetical protein 27 2.8
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 3.7
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 3.7
At5g47690.1 68418.m05887 expressed protein 27 4.9
At5g45460.1 68418.m05585 expressed protein 27 4.9
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 4.9
At1g20410.1 68414.m02545 expressed protein 27 4.9
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote... 26 6.4
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 26 6.4
At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6 s... 26 6.4
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 26 8.5
At3g09130.1 68416.m01074 hypothetical protein 26 8.5
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 26 8.5
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.1 bits (72), Expect = 0.056
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 3 DAPXMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKS 182
D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 155 DLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMG 214
Query: 183 EVITNV 200
+ N+
Sbjct: 215 SIAPNL 220
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 110 VKLLLQNVVRDVGICSIQRCH 48
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.1 bits (57), Expect = 3.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 46 SWHLCMLQIPTSLTTFWRSSFTIASSLPITTV 141
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 87 DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 218
D+LE++ Y V+ + + +YE ++SEV+ + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777
>At5g45460.1 68418.m05585 expressed protein
Length = 703
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +3
Query: 60 YAADSDVPNDILEEQLYNSVVVADYDSAV----EKSKHLYEEKKSEVITNVVNKLIRNNK 227
+A ++P D E+L V DYD ++ ++ Y+E K E I ++ + N
Sbjct: 611 WALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNH 670
Query: 228 MNCMEYAYQLWLQGSKDIVRDC 293
+ + + L Q VR C
Sbjct: 671 LRLHDVSPDLATQSD---VRGC 689
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 33 ILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
+LC+ +++ DS + + + + +V DYD+ V+ S + E+ S ++TN V+
Sbjct: 405 LLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLTNGVD 463
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +3
Query: 27 IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
I I+CL + L SDV ++++ +S VA V++ +H ++ EV +V +
Sbjct: 97 ICIVCLGI--LQFVFSDVKKELVKSDS-SSDYVARITDLVKQDRHEFDSFGLEV--SVPS 151
Query: 207 KLIRNNKMNCM----EYAYQLWLQGSKDIVRDCXPV 302
++ N + +Y+ ++WLQ K V+D V
Sbjct: 152 TIMENERALLSYLKGKYSTEVWLQRDKISVKDALKV 187
>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
low similarity to SP|P24640|LIP3_MORSP Lipase 3
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Moraxella sp}; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 328
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 356 VALVHKLNRVFGEDKSELNWXTITDDVLGALEPK 255
V L H+L R GED+++L T + +PK
Sbjct: 254 VELAHRLKRYLGEDRAQLVLLKKTGHAINEEKPK 287
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 27 IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKS 155
++ L + V ++ +VP + E LY+S V D D+++ KS
Sbjct: 405 VMALVMGVVTMIKVTKNVPRKLTESTLYSSPVYCD-DASMNKS 446
>At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847
Length = 168
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 3 DAPXMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEK 152
D + P+ +I+ L V +L + +P D+L + + D DSA +K
Sbjct: 105 DLEGLLPSAMIMVLLVTALTTKGNQLPEDVLLKTIDACDRALDLDSARKK 154
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 49 WHLCMLQIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAK 186
W +L PT TT SSF+I+ S + TV+ R + R K
Sbjct: 385 WEDGVLNCPTEQTTRPDSSFSISHSKVVDTVQQARKAAKKAREVVK 430
>At3g09130.1 68416.m01074 hypothetical protein
Length = 397
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 78 VPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKM 230
V ND++EE++ + + YD K+ + K E ++ +N NK+
Sbjct: 103 VENDLIEEEMDTAKLAVGYDGETIVIKNDVDSKWKEELSKPLNLSETENKV 153
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 90 ILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 203
IL + S+V Y EKSK +Y E +S +I NVV
Sbjct: 774 ILSSLYHYSIVDGPYR---EKSKAIYTELRSNLIRNVV 808
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,564,842
Number of Sequences: 28952
Number of extensions: 107752
Number of successful extensions: 485
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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