Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30525
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 75 8e-15
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 52 4e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 28 0.72
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 27 1.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 3.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 3.8
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 5.1
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 8.9
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 8.9
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch... 25 8.9
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 74.5 bits (175), Expect = 8e-15
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 160 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 339
+ VG LP L+E+ P V E + K ++ VPGAFTP CS + +PGY+ N +
Sbjct: 2 VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57
Query: 340 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKALDLGTNLPPLGG 510
+ G++ I V+VND +V AW + + V +AD +G F KA D G + L G
Sbjct: 58 AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLG 116
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 52.4 bits (120), Expect = 4e-08
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = +1
Query: 160 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 339
I+VGD +P L D + + ++TA K +V+FA P A TPGC+K G+ N K+
Sbjct: 46 IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103
Query: 340 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKAL 477
++ E++ +S + A+ + N +L+DP G IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 0.72
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 214 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 384
NK + EL KV++ + C K P Y AD+L+ DG++ E+ C D
Sbjct: 28 NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 366 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 277
H+ S+RF+ + LY VC TS +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 84 YPWHYRIHQSSVSASTSHFTIKHGTN 161
+P + H +S+S+ HF+++H N
Sbjct: 653 FPQALKAHMNSISSPKRHFSLRHKKN 678
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 354 NSIRFQFICVLYVSRQVCFRTSRG 283
NSI+ F+C++Y+S+ + ++ G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 313 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 456
GY+ +++ L +G + + V++P A W +H N + + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 325 NADKLKSDGVAEIVCVSVND 384
N D + G A++VCV VND
Sbjct: 35 NKDTVSLAGKAQVVCVFVND 54
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 95 LPHSPIERQREHFTFHN*AWHQLRSGISCLLLIYSKILPLI 217
L H IE +++ T WH R +C+ +YS I +I
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMI 79
>SPCC1827.06c |||aspartate semialdehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 265 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 411
+ P P + + GY + +++SD + +I VS+ V+ A GA
Sbjct: 295 STPDRPQPRLDRNNENGYAVSVGRIRSDSIFDIKFVSLVHNTVLGAAGA 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,872
Number of Sequences: 5004
Number of extensions: 42431
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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