Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30525
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 90 1e-18
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09) 30 1.3
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 30 1.3
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6) 29 3.0
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10) 28 5.3
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 27 6.9
SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 89.8 bits (213), Expect = 1e-18
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Frame = +1
Query: 151 MAPIKVGDQLPAA--DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 324
M P + G ++P + E + KV+ L AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1 MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60
Query: 325 NADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPL 504
A K+ GV +I+C+SVND +VM +W A + + + D +G F + + + + L
Sbjct: 61 LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSDL 119
Query: 505 G 507
G
Sbjct: 120 G 120
>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 337 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGK 432
+KS GV + C++VNDP+VM+AWG + +GK
Sbjct: 53 IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84
>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
Length = 231
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 61 MFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELT 240
M G ++ G + ASA + LS I G QLP DL D+ N + ++
Sbjct: 18 MRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAIQIA 77
Query: 241 A 243
+
Sbjct: 78 S 78
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 277 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 381
A PG S+ L + + A +KSD +A+ IVCV +N
Sbjct: 84 ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119
>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
Length = 178
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 343 ISVYLRSVRIPASVF*NIPG*RRPAPQII 257
+SVY S +P +VF +PG R P P ++
Sbjct: 24 LSVYKASELLPRTVFIRVPGGRCPCPHLL 52
>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
Length = 597
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 386 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 261
GSL + TI+++ +F+++A +PG + V P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 426 FSVVL-SSPSRHHIRVINRHAHYFSNSIRFQFICVLYVS 313
FS++L SSPS++H ++ H+ ++ F +I ++ +S
Sbjct: 261 FSIILTSSPSKYHRHLVPSPFHHDNSLHHFPYISIINIS 299
>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 420 VVLSSPSRHHIRVINRHAHYFSNSIRFQFICVLYVSRQV 304
VV P HI + H H+ R QF +LYV +
Sbjct: 621 VVQLEPKFDHITPVLTHLHWLPVEFRIQFKILLYVHHSI 659
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 274 PAPQIIQPSFPPSTHKYSP 218
P+ + QPS PSTH YSP
Sbjct: 149 PSQSLYQPSPHPSTHLYSP 167
>SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 43 KNFYLLMFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKV 222
K+F + +LTGS + +FT R ++ Q + ++ P +FE SP + +
Sbjct: 10 KSFLVHRYLTGSCA--KMESFTGRHKKEVIYEGQSHLLLVRDETGPPDLQVFEMSPLSMI 67
Query: 223 NI 228
N+
Sbjct: 68 NV 69
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +1
Query: 52 YLLMFLTGSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSP 210
++L+ +T SS G+T ++AR LH++++ + P+ +G + +L +P
Sbjct: 3587 HVLVVITDSS--SGLTDQDISSAARPLHLNEIRLIPVGLGGLIGKKELESMTP 3637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,149
Number of Sequences: 59808
Number of extensions: 354182
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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