Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30525
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    30   0.85 
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    30   0.85 
AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   3.4  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +1

Query: 202 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 375
           D+P NK+ + +LT+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 376 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 462
            N    M A     +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +1

Query: 202 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAE--IVCVS 375
           D+P NK+ + +LT+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 376 VNDPYVMAAWGAQHNTKGKV-RMLADPSGN 462
            N    M A     +TKG V R+ + P+G+
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPNGH 222


>AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical
           protein H24K24.2 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +1

Query: 64  FLTGSSIIRGITAFTNRASARALHISQLSMA-------PIKVGDQLPAADLF 198
           F+ G  I+R + +F N  S   LH  +++M        P K+ + LPA   F
Sbjct: 79  FMNGYDIVRFLESFLNEESRNVLHSLEITMESPFAKEWPAKINNMLPALKCF 130


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 287 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 162
           G    G+  N  F P    ++  LLAGE++ KS +G  S  L
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 347 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 234
           +DF   A C+   K   EH G + P     T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 366 HYFSNSIRFQFICVLYVSRQVCFRTSRGEGARHRK 262
           H+F+  I   FICV  VS +   RT+R  G +++K
Sbjct: 129 HFFNIPISLYFICVFLVSSKTHKRTTR-SGRKNKK 162


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 392 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 303
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 292 IPG*RRPAPQIIQPSFPPS 236
           +P   RPAPQ +QPSF P+
Sbjct: 294 VPQPVRPAPQPVQPSFQPA 312


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 359 SATPSDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPA 240
           S  PS F  S  CT P K + + P      TA+  T  P+
Sbjct: 259 SPIPSGFWFSTNCTRPAKYICKRPAGVQSTTASPVTVAPS 298


>Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical
           protein C27A7.5e protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 73  GSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 246
           G  ++ G       ASA +  +  L    I  G Q+P A++  D   N +    +TAG
Sbjct: 195 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 251


>Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical
           protein C27A7.5d protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 73  GSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 246
           G  ++ G       ASA +  +  L    I  G Q+P A++  D   N +    +TAG
Sbjct: 158 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 214


>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 73  GSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 246
           G  ++ G       ASA +  +  L    I  G Q+P A++  D   N +    +TAG
Sbjct: 226 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 282


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 73  GSSIIRGITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAG 246
           G  ++ G       ASA +  +  L    I  G Q+P A++  D   N +    +TAG
Sbjct: 224 GFVVLHGTDTLAYTASALSFMMENLGKPVIITGSQIPVAEVRSDGMENLIGAL-ITAG 280


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 278 APGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTLIG 156
           A  T  NT F  ++  Q+F L  GE+S + +       L+G
Sbjct: 389 ATNTIVNTVFSSSITGQLFCLKLGETSEQDSTSFNFAALVG 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,663
Number of Sequences: 27780
Number of extensions: 257859
Number of successful extensions: 642
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)