Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30524
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.26 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 310 DLQRQLSKANAEAQLWRSKYESEGVARSEELEEAKRKLQARLAEAEETIESLNQKVVA 483
           D  R L  A  +  +       +   +S++LEE+ RKL   +   +E +  +  K VA
Sbjct: 347 DFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVA 404


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 112  QLEEAESQVSQLSKIKVSLTTQL 180
            +L EAE  +  L K+K+ L + L
Sbjct: 1883 ELSEAECDIDSLKKLKLGLRSSL 1905


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 112  QLEEAESQVSQLSKIKVSLTTQL 180
            +L EAE  +  L K+K+ L + L
Sbjct: 1879 ELSEAECDIDSLKKLKLGLRSSL 1901


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 57  RPGCR*EEAVHRELRPSPPTGGGRVPG 137
           RP  + E    +  +PSP TG  +  G
Sbjct: 348 RPSDKEEREAQKSQKPSPVTGASKSHG 374


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 55  NDLDAAKKKLSIENSDLLRQLEEAESQVSQLSK 153
           NDL   ++K +IEN  L R  +   + + + +K
Sbjct: 434 NDLSINEEKRTIENEQLNRMYKSYPNYIDKETK 466


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 102 PSPPTGGGRVP 134
           PSPP G G VP
Sbjct: 396 PSPPRGPGGVP 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.303    0.119    0.291 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,755
Number of Sequences: 438
Number of extensions: 2543
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.0 bits)