Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30523
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 30 1.3
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 29 1.7
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 29 1.7
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 29 2.2
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 28 3.9
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694... 27 8.9
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162... 27 8.9
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = -3
Query: 484 EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPYPLID 344
++++ NF +Y + W+ V ++P+ +T + +FN+ +PY +I+
Sbjct: 305 KITVTNF-NYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVIN 350
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 323 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 496
PLK + E +W + V+ G + R + YW ++ V+ S S+
Sbjct: 141 PLKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDP 200
Query: 497 TDRTIS 514
R I+
Sbjct: 201 VPRIIT 206
>01_06_0705 +
31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +2
Query: 263 GKWKRDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVL 442
G WK DE ++ I +PL F +I GE + + +R +PH W P
Sbjct: 191 GSWKNDEAATKSLAIDGYSVPL-FKVKIT----SGELFL-----HESVKRAIPHSWDPSA 240
Query: 443 KRTVVRSEVLNTHLSVTVT 499
+ + E TH+ +VT
Sbjct: 241 LASFI--ENYGTHIITSVT 257
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +2
Query: 323 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 496
PLK + E +W + V+ G D R + YW + ++ S S+
Sbjct: 144 PLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDP 203
Query: 497 TDRTIS 514
R I+
Sbjct: 204 LPRIIT 209
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +2
Query: 323 PLKFPAEINEGIWGGEAVVKGFQKRDDRR--RRVPHYWVPVLKRTVVRSEVLNTHLSVTV 496
PLK + E +W + VV G + R + YW + V+ S S+
Sbjct: 139 PLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDP 198
Query: 497 TDRTIS 514
R I+
Sbjct: 199 IPRIIT 204
>03_04_0076 -
17068516-17068838,17068897-17069198,17069282-17069435,
17069506-17069965,17070413-17070492,17070813-17070869,
17071757-17071838
Length = 485
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 469 NFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPYPLI 347
N+R YS W+ VV++P ++ + +FN+ +PY +I
Sbjct: 333 NYRMNYSQ---WNLVVQHPNFENVSTVFSFNYKSLNPYGVI 370
>03_01_0206 -
1625020-1625619,1625722-1625931,1626054-1626094,
1626185-1626234,1626345-1626433,1626534-1626608,
1626721-1626806,1626896-1626956,1627090-1627206,
1627308-1627549,1627983-1628040,1628162-1628284
Length = 583
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 284 LTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHY 427
LT PI I IP + A I G+ +VKG + + D RRR+ Y
Sbjct: 72 LTVAQTPISKICIP-ESAANIMLPCKAGQDIVKGLKGKKDHRRRLLWY 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,382
Number of Sequences: 37544
Number of extensions: 280074
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -