Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30523
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   32   0.32 
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_48292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 287  TGETYPIQNI--PIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVR 460
            TG+ Y   N+  PI +++P+E    I GGE   K +   +     V H W+P       R
Sbjct: 930  TGQVYDSINLCRPIDVQWPSE-QMRIKGGEKFWKDWHPEEGMVGVVVHRWLPNHPDPARR 988

Query: 461  SEVLNTHLSVTVTDRTI 511
            S V  T L V + D  +
Sbjct: 989  SHVNRTILLVKIEDHYV 1005


>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 20  IVTH*NSVNIFPQRFMLPKKL*SNSMASSRLQVTA 124
           I+T  N +N +P+R  L K +  NS+A+ R   T+
Sbjct: 304 IITPGNDLNSYPRRSRLKKPISRNSLATDRFSYTS 338


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 344 FQRGI*EE*EYFVSDKFHQSIRRVSTSLLEERNVQLL 234
           F   + E+  YF S+K HQ + R+  S   E+ +Q+L
Sbjct: 384 FSAYVDEKARYFASNKKHQQLIRMKNSYRSEKWLQML 420


>SB_48292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
 Frame = +2

Query: 212 REWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQ 391
           REW    P  +      G   +D +     P++    PL+ P E+   +    AV +   
Sbjct: 137 REWVTALPIVISKTRMTGFAPKDAIKLRGVPLKAEKPPLEVPLEVGTEV--NIAVNEEDL 194

Query: 392 KRDDRRRRVPHYWV----PVLKRTVVRSEVL 472
           +   RRR    +W     P+LKR +   + +
Sbjct: 195 QDKGRRRATDPWWTSKAYPILKRVMEHGQAV 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,586
Number of Sequences: 59808
Number of extensions: 318799
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)