Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30522
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.70 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.6  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   4.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 227 IDLANTKSGPNIHTRPDLGSAPP 295
           ID+  T+ GP I T+P    A P
Sbjct: 329 IDVHGTRRGPKIKTQPKAEEAKP 351


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 320 ARPSGA*PRDGIAGRSHSTRRLPYRPP 400
           A PSGA   DG  G     +++ +RPP
Sbjct: 409 AGPSGAYSPDGTMGYMMDGQQMMHRPP 435


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 105 CAPHWARNPTMEYCSCTRTISRPRSRAME 191
           C      N   EYC CT  ++ P    +E
Sbjct: 490 CNESSVSNCENEYCECTHVVNIPLGTVVE 518


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 85  YTHPPWGVLHIGLGTRPWNIVPVQEQYPGRDPVQWR 192
           Y  PP+GVL       P N   V +     DP   R
Sbjct: 6   YAQPPFGVLRFKAPQPPENWTGVLDATKEGDPCYGR 41


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 85  YTHPPWGVLHI 117
           Y H PW  LH+
Sbjct: 532 YNHRPWQQLHL 542


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/29 (31%), Positives = 10/29 (34%)
 Frame = +1

Query: 94  PPWGVLHIGLGTRPWNIVPVQEQYPGRDP 180
           PP     +G G  PW   P     P   P
Sbjct: 53  PPLADAAVGKGFHPWKKSPQGAPSPSSTP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,674
Number of Sequences: 336
Number of extensions: 4171
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)