Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30522
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    31   0.077
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    30   0.24 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    29   0.31 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.7  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   6.7  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   6.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.7  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   8.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.9  

>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -3

Query: 232 INLGGAE-DATRELPSIARDLGLDIVLVQEQY 140
           +++GG + + TR++ ++A  LGLD VL+QE +
Sbjct: 71  VSIGGIQSNQTRQVAAVAAHLGLDCVLIQEDW 102


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = +1

Query: 334 CIASRRNRRQVAQHAEAALQASIRWPSSPHRPQVASLARQNFSG*PYC*HLLQQVT 501
           C ASR     VA HA   +  S    S  H P V S +  N S  PY    +  VT
Sbjct: 470 CGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSINSVT 525


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = -2

Query: 491 CNKCQQYGHPEKFCRA--KEATCGRCGEDGH 405
           C  C Q GH    C    +E TC  CG  GH
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYACGTAGH 68



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 491 CNKCQQYGHPEKFCRAK-EATCGRCGEDGHR 402
           C KC + GH  + CR   + + GR G  GHR
Sbjct: 85  CYKCGRVGHIARDCRTNGQQSGGRFG--GHR 113


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 5   PPPNVHYRYMCAAKVVQNRAGE-HPIADIHTRLGVCST 115
           PPP    R    +K   +  G+ HPI D H RL V ST
Sbjct: 736 PPPMALIRNSTRSKAYFDSEGKPHPITDSHNRLLVPST 773


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 45   RWCRTAQGSTLLRIYTPALG-CAPHWAR 125
            RW +T  G++ + IY P LG  AP+ +R
Sbjct: 2262 RWLQTLWGTSNIGIYVPFLGKGAPYLSR 2289


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 36  VLLRWCRTAQGSTLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVASS 215
           V L  CR + GST+L  Y P +        +  + +CS    I    +R +   S +  +
Sbjct: 415 VRLLSCRCSDGSTMLPAYCPII-------PSSEVNFCSIDNRIIAGMNRDLALDSDIIGN 467

Query: 216 APP 224
           +PP
Sbjct: 468 SPP 470


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 140 ILFLYKNNIQAEIPCNGG*LPRRILCTTQIDLANTKSGPNIHTRPDLGSAPPHAGAPDS 316
           ++ +  N    E+P +G  L  R     +ID  N+    N+HT     S  P A    S
Sbjct: 253 LIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTSASQVSLSPMASTASS 311


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 484 SVSNMVTRRNFAGPRRPPVADVERMATEW 398
           SV+ ++ R    GP + PVADV    T +
Sbjct: 672 SVTGLIARDQMVGPWQVPVADVGVTVTSY 700


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
 Frame = -2

Query: 491 CNKCQQYGH-----PEKFCRAKEATCGRCGEDGH 405
           C  C   GH     PE+        C  CG  GH
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGH 344


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 DPVQWRVAPSSHPLHHPD*FG 237
           DP+  R  PSSHPLH P   G
Sbjct: 477 DPLYTR--PSSHPLHPPPILG 495


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 467  HPEKFCRAKEATCGRCGEDGHRM 399
            H  K C  + +TC +CG+  H +
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNL 1816


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 467  HPEKFCRAKEATCGRCGEDGHRM 399
            H  K C  + +TC +CG+  H +
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNL 1816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,757
Number of Sequences: 5004
Number of extensions: 58693
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)