Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30522
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   10.0 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   10.0 

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = -2

Query: 200 GATLHCTGSRPGYCSC-TGTIFHGR 129
           G  L C  SRPG C    G I  G+
Sbjct: 169 GRVLACISSRPGQCGREDGYILEGK 193


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 38  HTYNGSAHWGVG 3
           +TYN S +WG G
Sbjct: 259 YTYNYSMYWGQG 270


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 108 APHWARNPTMEYCSCTRTISRPRSRAMEGSSLVASSAPPRLIWPIRS 248
           +P+ + +P  E C+ T TI+    +  +G    A+S      WP  S
Sbjct: 740 SPNASPSPA-EQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATS 785


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 302 GAPDSRARPSGA*PRDGIA 358
           G  D+R RPSG    DG A
Sbjct: 41  GGYDARIRPSGENATDGPA 59


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 302 GAPDSRARPSGA*PRDGIA 358
           G  D+R RPSG    DG A
Sbjct: 41  GGYDARIRPSGENATDGPA 59


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 204 VASSAPPRLIWP 239
           VA   PPR +WP
Sbjct: 571 VAEWEPPRALWP 582


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 356 AGRSHSTRRLPYRPPF 403
           +G   +  R PY+PPF
Sbjct: 208 SGGLMNVERFPYQPPF 223


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 SSAPPRLIWPIRSRGLISILDLI*EALLR 296
           S+ PP ++   R    +S+  LI  ALLR
Sbjct: 309 STNPPNILLYYRDSLALSVFALILTALLR 337


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 224 QIDLANTKSGPNIHTRPDLGSAPPHAGAPDS 316
           +++  N  S   IH  P   +APP     +S
Sbjct: 432 ELEAVNLGSACRIHGSPATTAAPPQLPTEES 462


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 461 PGDHIADTYCSRS 499
           PGDH+    C+RS
Sbjct: 753 PGDHLGVFACNRS 765


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,670
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)