Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30522
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51300.2 68418.m06360 splicing factor-related contains simila... 32 0.20
At5g51300.1 68418.m06359 splicing factor-related contains simila... 32 0.20
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 31 0.46
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 31 0.61
At5g07030.1 68418.m00796 aspartyl protease family protein contai... 30 0.80
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 30 1.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.9
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 2.5
At5g28750.1 68418.m03531 thylakoid assembly protein, putative si... 28 3.2
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 28 3.2
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 4.3
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.7
At4g24000.1 68417.m03449 cellulose synthase family protein simil... 27 5.7
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 27 5.7
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ... 27 7.5
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 27 7.5
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 27 7.5
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 27 9.9
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 27 9.9
At4g17780.1 68417.m02653 F-box family protein contains F-box dom... 27 9.9
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 9.9
At3g23940.1 68416.m03007 dehydratase family contains Pfam profil... 27 9.9
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 9.9
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa... 27 9.9
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.20
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 245 KSGPNIHTRPDLGSAPPHAGAPDSRARPSGA*PRDGIAGRSHSTRRLPYRPPFGGHPLHI 424
KS P I PP G P S +P GA P A +ST +P+ PP + +
Sbjct: 558 KSPPPIAPPGPPAPQPPTQGYPPSN-QPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYA 616
Query: 425 GHRWPPWPGKISP--GDHI 475
PP PG P G H+
Sbjct: 617 --LPPPPPGSYHPVHGQHM 633
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.20
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 245 KSGPNIHTRPDLGSAPPHAGAPDSRARPSGA*PRDGIAGRSHSTRRLPYRPPFGGHPLHI 424
KS P I PP G P S +P GA P A +ST +P+ PP + +
Sbjct: 558 KSPPPIAPPGPPAPQPPTQGYPPSN-QPPGAYPSQQYATGGYSTAPVPWGPPVPSYSPYA 616
Query: 425 GHRWPPWPGKISP--GDHI 475
PP PG P G H+
Sbjct: 617 --LPPPPPGSYHPVHGQHM 633
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 512 DFVRVTCCNKCQQYGHPEKFCRAKEATCGRCGEDGH 405
D V+ CN C GH C A E+ C C E GH
Sbjct: 69 DCSNVSVCNNCGLPGHIAAECTA-ESRCWNCREPGH 103
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 491 CNKCQQYGHPEKFCRAKEATCGRCGEDGHR 402
C C++ GH C + E C CG+ GHR
Sbjct: 95 CWNCREPGHVASNC-SNEGICHSCGKSGHR 123
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 389 YRPPFGGHPLHIGHRWPPW-PGKISPGD--HIADTYC 490
+ PP HPL + H + PW P K+ G H +D C
Sbjct: 501 WHPPEVNHPLEVNHSYHPWHPLKLHTGQPPHYSDGTC 537
>At5g07030.1 68418.m00796 aspartyl protease family protein contains
Pfam profile:PF00026 eukaryotic aspartyl protease
Length = 439
Score = 30.3 bits (65), Expect = 0.80
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 63 QGSTLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVASSAPPRLIWPI 242
QGSTL RI+ C+P + +P +T+++ ++R SSLVA R + PI
Sbjct: 33 QGSTL-RIFHIDSPCSPFKSSSPLSWEARVLQTLAQDQARLQYLSSLVAG----RSVVPI 87
Query: 243 RS-RGLISILDLI*EALLRMPAR 308
S R ++ I +AL+ PA+
Sbjct: 88 ASGRQMLQSTTYIVKALIGTPAQ 110
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 386 PYRPPFGG--HPLHIGHRWPPWP---GKISPGDHIADTY 487
P RPP GG P HIG PP P G P H+ Y
Sbjct: 243 PQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNY 281
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = +2
Query: 272 PDLGSAPP-HAGAPDSRARPSGA*PRDGIAGRSHSTRRLPYRPPFGGHPLHIGHRWPPWP 448
P + +PP +P + P G+ P I ST P PP G P P
Sbjct: 426 PSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSP 485
Query: 449 GKISPGDHIADTYCSRSPGQSP 514
+PG + + +PG SP
Sbjct: 486 TTPTPGGSPPSSPTTPTPGGSP 507
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Frame = -2
Query: 491 CNKCQQYGHPEKFCR------AKEATCGRCGEDGHRM 399
C C++ GH K C +K A C RCG+ GH M
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDM 246
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 464 PEKFCRAKEAT-CGRCGEDGH 405
PE+ ++EA+ C RCGE+GH
Sbjct: 315 PERLFNSREASECYRCGEEGH 335
>At5g28750.1 68418.m03531 thylakoid assembly protein, putative
similar to thylakoid assembly 4 (tha4) protein [Pisum
sativum] GI:4929305; contains Pfam profile PF02416:
mttA/Hcf106 family
Length = 147
Score = 28.3 bits (60), Expect = 3.2
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +3
Query: 195 SSLVASSAPPRLIWPIRSRGLISILDLI*EALLRMPARRTVARGRRVHSLATESPAGRTA 374
+S+ S+PP + P+ S S R R VA GRR+ T P A
Sbjct: 3 TSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPTRKPLTCNA 62
Query: 375 RGGCLTGLHSVAILSTSATGGLLGPAK 455
G G+ +A+++ L GP K
Sbjct: 63 LFG--LGVPELAVIA-GVAALLFGPKK 86
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 266 TRPDLGSAPPHAGAPDSRARPSGA*PRDGIAGRSHSTRRLPYRP 397
T+ LGS P GA ++A S + I G+ +R +PY P
Sbjct: 301 TQSSLGSTPSPFGAQGAQASTSTFGGQSTIGGQQGGSRVIPYAP 344
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 250 RLRIGQINLG---GAEDATRE-LPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAG 92
R+ G N+G + DA L S+A D+G+ +V +QE GFLA A G
Sbjct: 577 RILTGSWNVGQGKASHDALMSWLGSVASDVGILVVGLQEVEMGAGFLAMSAAKESVG 633
>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 111 EHTPRRVCISAIGCSPARFCTTLAAHI 31
EHT +R ++ GC P RF TL A++
Sbjct: 155 EHTVQRNPLAIPGCEPVRFEDTLDAYL 181
>At4g24000.1 68417.m03449 cellulose synthase family protein similar
to cellulose synthase from Gossypium hirsutum
[gi:1706956], cellulose synthase-5 from Zea mays
[gi:9622882]
Length = 722
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 200 GATLHCTGSRPGYCSCTGTIFHGRVP 123
G LHC G R +CS T F+G P
Sbjct: 441 GFMLHCEGWRSIFCSPTKAAFYGDSP 466
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 515 TDFVRVTCCNKCQQYGHPEKFCRAKEAT 432
T V +TC +C+Q GH K C +E T
Sbjct: 220 TKHVELTCY-RCKQEGHIAKICPTRETT 246
>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
identical to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 665
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 500 VTCCNKCQQYGHPEKFCRAKEATCGRC 420
+ C N CQ++G PE C + +C
Sbjct: 182 IACMNACQKFGLPEFCCYGEYGKPAKC 208
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 223 GGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHP 101
GG R +P +A+++ V E S + L + G HP
Sbjct: 412 GGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGKHP 452
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 221 WCRGCDEGATLHCTGSRPGYCSCTGTIFHGRV 126
WC C G L G R G C G F R+
Sbjct: 11 WCHTCRRGIHLQGEGRREGACIYCGNTFLERL 42
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 179 GSRPGYCSCTGTIFHGRVPSPMWSTPQG-GCVYPQ*GAPLRGSAPP*QHTYNGSAHWGVG 3
G PGY G+ + GRV S + PQ G YP G G+ + NG + G G
Sbjct: 206 GGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGY--GYGSNGVGYGGFG 263
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +2
Query: 263 HTRPDLGSAPPHAGAPDSRARPSGA*PRDGIAGRSHSTRRLPYRPPFGGHP 415
H P G PP P P+G P G ++ Y P GG+P
Sbjct: 24 HYPPAQGGYPPQGYPPQQGYPPAGGYPPAGYPPGAYPAAPGGYPPAPGGYP 74
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
(IRX1) nearly identical to gi:12836997
Length = 985
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = -2
Query: 281 LNQVEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 123
++ + GY T W + GW G G +HC G R YC F G P
Sbjct: 656 IHVISCGYEEKTE-WGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAP 712
>At4g17780.1 68417.m02653 F-box family protein contains F-box domain
Pfam:PF00646
Length = 347
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 227 SGWCRGCDEGATLHCTGSRPGYCSCTGTI 141
S C+G +E LHC ++P + +C G +
Sbjct: 80 SSQCKGNEEIVYLHCNAAQPSF-TCDGLV 107
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +2
Query: 290 PPHAGAPDSRARPSG--A*PRDGIAGRSHSTRRLPYRPPFGGHPLHIGHRWPPWPGKISP 463
PP G P + G + P+ G S +P PP G P+ G P PG P
Sbjct: 123 PPFGGRPSTGPLVGGGSSFPQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGPGMSMP 182
>At3g23940.1 68416.m03007 dehydratase family contains Pfam profile:
PF00920 dehydratase family
Length = 608
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 226 LGGAEDATRELPSIARDLGLDIVL--VQEQYSMVGFLA 119
LGG+ +A L +IAR +GL++ L Q+ V FLA
Sbjct: 318 LGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLA 355
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -2
Query: 272 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 123
+ GY T W + GW G G +HC G R YC F G P
Sbjct: 764 ISCGYEEKTE-WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAP 817
>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
family protein similar to inositol 1,4,5-trisphosphate
5-phosphatase (GI:4688596) [Arabidopsis thaliana]
Length = 861
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 250 RLRIGQINLG---GAEDATRE-LPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGV 89
R+ IG N+G + DA L S+ D+G+ V +QE GFLA A G+
Sbjct: 572 RILIGTWNVGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGL 629
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,731
Number of Sequences: 28952
Number of extensions: 365369
Number of successful extensions: 1103
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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