Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30521
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34970.1 68418.m04127 hypothetical protein similar to At5g368...    28   4.3  
At2g29510.1 68415.m03584 expressed protein                             27   5.7  
At1g73990.1 68414.m08569 peptidase U7 family protein similar to ...    27   7.5  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   7.5  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    27   9.9  

>At5g34970.1 68418.m04127 hypothetical protein similar to At5g36850,
           At1g27780, At2g05560, At3g42730, At1g52020, At2g14770,
           At3g43390, At3g24390, At1g34740, At1g25886, At4g03300,
           At4g05280
          Length = 478

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 366 PRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE*TTL 497
           PR +   +K  R   ++P+ K S ++ +    +P+V+PTE  T+
Sbjct: 11  PRKQHGQRKEKRVLRVSPRRKRSATKATEELGSPSVAPTEDLTV 54


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 354 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVS 476
           +C+ PR+R +   P+RSRTL  ++  +  + S    A  +S
Sbjct: 362 SCSAPRSRKAESSPSRSRTLDRRSTETLPKQSDQKPAKVLS 402


>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
           protease IV GB:AAA57008 from [Escherichia coli];
           contains Pfam profile PF01343: Peptidase family U7
          Length = 677

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 311 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVG 463
           +I   +DVA  G +Y+    N I+AE      ++G       +   YE +G
Sbjct: 450 VIASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIG 500


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 365  TENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 490
            TE ++L E+  K+E +  E EG+K     E    D  T + D
Sbjct: 966  TETQVLVEDTQKIEALTEEVEGLKANLEQEKQRADDATRKFD 1007


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 271 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 125
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 336 LPKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSP 479
           L + TT    PRTRFS K+  +S +  P + +S SR       P  +P
Sbjct: 250 LRRDTTVSCSPRTRFSEKENKQSTSHKPNSSSS-SRPEPIIQKPKPTP 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,364,754
Number of Sequences: 28952
Number of extensions: 147879
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)