Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30519
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 2.3
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 2.3
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 4.0
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 4.0
SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 27 6.9
SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 27 9.2
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62) 27 9.2
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 285 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 464
+ ++ P V +K P G DY Y + D +A YH L E +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 465 G 467
G
Sbjct: 241 G 241
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 311 NVCGCDHLAGNVCGCDWHGNGRL 243
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 133 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 222
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 320 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 192
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 133 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 222
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 305 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 225
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 418 PRTRFSLKKPARSRTLAPKTKASRSRD 498
P+T+ KP +R + KTK SR++D
Sbjct: 25 PKTKTKTSKPQAARQASRKTKTSRTQD 51
>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1205
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 363 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVG 515
I+RYD + P Y E++I E K +++ G+ GF+E +G
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIG 541
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 406 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDS 501
TC R + SL P+ S + +P A+R RDS
Sbjct: 44 TCPHCRAKASLPSPSPSPSPSPSQGATRERDS 75
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 418 PRTRFSLKKPARSRTLAPKTKASRSRDSTNTLA 516
P+T+ + KPAR R +PK K S+ +D +A
Sbjct: 289 PKTKST--KPARPRQASPKAKTSKPQDQDKQVA 319
>SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 460 TLAPKTKASRSRDSTNTL 513
T+APKTK SR+ +TNT+
Sbjct: 11 TMAPKTKCSRATMATNTV 28
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 391 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNT 510
PK T TRP+TR + R +T PKTK S+S+ T T
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKT 306
>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
Length = 546
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 403 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRD 498
T T R R+ + P RS L P+ +ASRSRD
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,405
Number of Sequences: 59808
Number of extensions: 198825
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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