Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30514
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    24   0.70 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.5  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 442 LCFPLVSKLLGTYWVFLIFP*VKPVLWAQS*FS*LHQIKLLCVLLI 305
           +CF L+S +LGT W+  +    K + + +  F  L  +  L +L++
Sbjct: 47  ICF-LLSTILGTCWIIYVRIYCKEIRFFEISFEILGSLDSLILLMV 91


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = -2

Query: 389 LSISEAGIMGSVLIFLTSSDKIIVCPFNLSLI--GMLAVEVEGTGLSIP-TSIISSEARE 219
           L IS  G+      ++  S    VC   + LI   +L ++   T L I   +I+ +   E
Sbjct: 134 LWISSVGVR-MFQYYIGRSFTYYVCNTTIFLIFHSVLPIKRFFTSLGIAFDNIMKNLICE 192

Query: 218 CDVYSVDIWSPFRCAAIFSSVINCFAGLRDSGSAGGACSHHPALSTVYYVPILEVCV 48
            D       + F+ A    + +NC+   R   +    C    A + +Y + +LE+ +
Sbjct: 193 IDGRHEFFLAEFKSAKTPPNKLNCYDLRRVRKNYNSICELVDAFNNIYGLAMLEIII 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,320
Number of Sequences: 336
Number of extensions: 2785
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)