Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30514
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 40 2e-04
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 0.72
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.95
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 27 2.2
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 3.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 5.1
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 5.1
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 25 6.7
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.9
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 39.9 bits (89), Expect = 2e-04
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 135 EGQWLCRRCLQSPSRLVNCVLCPNTGG 55
EGQW C++CL +P ++ C CP+ G
Sbjct: 233 EGQWFCKKCLLAPHEVICCAFCPDRDG 259
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.72
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 256 DSPVPSTSTANIPMSERLKGHTIILSDEVKKIKTEPIIPASLMERLEKPSMSL 414
+ PV S + + E++ G+T S E +K TEP P+ + +R E L
Sbjct: 370 EKPVTSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKETTGTKL 422
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 0.95
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 199 STEYTSHSLASEDMMDVGMDSPVPSTSTANIPMSERLKGHTIILSDEVKKI 351
ST S +S + SP PSTS+ I S + G + ILS + I
Sbjct: 607 STSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTI 657
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 390 SFHK*SRYYGLSLNFLDFIR*NYCVSF 310
SF+K + Y + + L F++ NYC+S+
Sbjct: 275 SFYKITILYEIKFDDLGFVQPNYCISY 301
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 220 SLASEDMMDVGMDSPVPSTST 282
+L + D MD+ M VPSTST
Sbjct: 265 NLPTHDSMDIDMGGAVPSTST 285
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 148 QLITEEKMAAHLNGLHISTEYTSHS--LAS-EDMMDVGMDSPVPSTSTANI 291
+ I E + G + S+ YTS+S LAS + D G + +P+TST ++
Sbjct: 40 ETILETVYVTAVPGANSSSSYTSYSTGLASVTESSDDGASTALPTTSTESV 90
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 112 PPAEPLSLRPAKQLITEEKMAAHLNGLHISTEYTSHSLAS 231
PPA ITEEK A L G H ++ + SLA+
Sbjct: 1318 PPATITKKTSLSHTITEEKTAQLLAGRHDDSKAETDSLAA 1357
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 280 WRLKVQGCPYLHPSYLRRLESVMYTL 203
W+ ++ CP Y++RL+ + TL
Sbjct: 1527 WKRLIESCPASQREYMQRLQKKLVTL 1552
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 226 ASEDMMD-VGMDSPVPSTSTANIPMS-ERLKGHTIILSDEVKKIKTEPIIP 372
+S+D + G+ S + A+ P+ E L TII+++++KKI IP
Sbjct: 35 SSQDALQRSGIRSAHGDSGYASSPLRMEHLSSSTIIINNQLKKIDVNESIP 85
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 132 GQWLCRRCLQSPSRLVNCVLCP 67
G C C+ S +LVN V CP
Sbjct: 214 GHTYCYACIMSRLKLVNNVSCP 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,924
Number of Sequences: 5004
Number of extensions: 42997
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -