Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30514
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0655 - 19254911-19254983,19255078-19255441,19255816-192559... 31 0.73
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 30 0.96
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 29 1.7
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 2.2
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 29 2.9
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 28 5.1
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 27 6.8
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 27 8.9
04_03_0374 - 15078721-15079350 27 8.9
02_04_0576 + 24009297-24009980,24010062-24010376 27 8.9
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 27 8.9
>09_04_0655 -
19254911-19254983,19255078-19255441,19255816-19255901,
19256737-19257410
Length = 398
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -2
Query: 416 TRDILGFSNLSISEAGI---MGSVLIFLTSSDKIIVCPFNLSLIGMLAVEVEG 267
T I+ S L +S+ G+ M S+ +F+ DKIIVC L+++GM V G
Sbjct: 230 TPSIIEGSVLIMSKTGVGLSMFSMGLFMALQDKIIVCGAGLTVLGMALRFVAG 282
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 126 WLCRRCLQSPSRLVNCVLCPNTGG 55
W+CR C ++P + C LCP GG
Sbjct: 585 WVCRAC-ETPDQKRECCLCPVKGG 607
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 199 STEYTSHSLASEDMMDVGMDSPVPSTSTANIPMSERLKGH--TIILSDEVKKIKTEPIIP 372
+TE H+L+ + + SP + N+ S L GH +L D+V++ + P +P
Sbjct: 454 ATEEDCHNLSEVSSLILSSGSPDSVSQDMNLQASPALGGHYEAPMLGDKVERAPSTPWMP 513
Query: 373 ASLM 384
S++
Sbjct: 514 FSML 517
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 126 WLCRRCLQSPSRLVNCVLCPNTGG 55
W+CR C + P + C LCP GG
Sbjct: 617 WVCRAC-ELPKQKRECCLCPVKGG 639
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 121 EPLSLRPAKQLIT---EEKMAAHL--NGLHISTEYTSHSLASEDMMDVGMDSPVPSTSTA 285
EP L P K++ EE +AA+L N LH+ TE T + D + ++ P +
Sbjct: 154 EPAILPPLKEIYEGNIEEGIAAYLYLNSLHLHTEMTVYDEEHLDEVKDPIERPDNAARAV 213
Query: 286 NIPMSERLKG 315
++ ER+ G
Sbjct: 214 DLKGLERIAG 223
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 109 APPAEPLSLRPAKQLITEEKMAA-HLNGLHISTEYTSHSLASEDMMDVGMDSPVPSTSTA 285
A P +P+ K I A H G +ST S+ LAS + + G+ +PVP+
Sbjct: 1197 ASPEQPIIAPLLKTDIASVTPATQHTPGFTLSTHSPSNILASGLVSNTGLVTPVPNYQIT 1256
Query: 286 NIPMSER 306
I +E+
Sbjct: 1257 GIKDAEQ 1263
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 422 QTTRDILGFSNLSISEAGIMGSVLIFLTSSDKIIVCPFNLSLIGMLAVEVE 270
Q T ++ SNL+ G S++ T + C L L G+LA+E E
Sbjct: 522 QPTLELFAASNLTSPNDGSQCSLIASETEEMCVSGCIIELELYGLLALEAE 572
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 422 QTTRDILGFSNLSISEAGIMGSVLIFL 342
Q T ++LG + LS+ AG+M S+++ L
Sbjct: 562 QGTGELLGAAILSVKRAGVMASLVLML 588
>04_03_0374 - 15078721-15079350
Length = 209
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 316 HTIILSDEVKKIKTEPIIPASLM 384
H I++D +KK++ + +IPASL+
Sbjct: 142 HLKIVNDRLKKLREQGLIPASLL 164
>02_04_0576 + 24009297-24009980,24010062-24010376
Length = 332
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 153 QLFCRSEGQWLCRRC 109
+L+CR++G +LC RC
Sbjct: 41 RLYCRADGAFLCARC 55
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 27.1 bits (57), Expect = 8.9
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = +2
Query: 101 DCKHRLQSHCPS 136
+CKHR+++HCP+
Sbjct: 83 NCKHRVENHCPT 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,236
Number of Sequences: 37544
Number of extensions: 276872
Number of successful extensions: 795
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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