Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30514
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_12980| Best HMM Match : Drf_FH1 (HMM E-Value=4.2)                   33   0.14 
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 29   1.7  
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_34337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -1

Query: 135 EGQWLCRRCLQSPSRLVNCVLCPNTGG 55
           EGQWLCRRCLQSPSR+V+CVLCPN  G
Sbjct: 296 EGQWLCRRCLQSPSRVVDCVLCPNKTG 322


>SB_12980| Best HMM Match : Drf_FH1 (HMM E-Value=4.2)
          Length = 270

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 145 KQLITEEKMAAHLNGLHISTEYTSHS 222
           KQ I+EEKMAA ++ L IS ++TS+S
Sbjct: 158 KQFISEEKMAAKMHDLCISNDHTSYS 183


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = +1

Query: 154 ITEEKMAAHLNGLHISTEYTSHSLASEDMMDVGMDSPVPSTSTANIPMSERLKGHTIILS 333
           +  + M  H+N   IS+  +S S     + D  +  P+   +   +P    ++  +  L 
Sbjct: 28  LARDTMEKHMND-SISSTCSSVSGVLSGIDDFDIIKPISRGAFGVVPSLGVVQASS--LK 84

Query: 334 DEVKKIKTEPIIPASLMERL 393
            E + +KT P++P+S+ME L
Sbjct: 85  QEAQGVKTWPVVPSSVMEYL 104


>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +1

Query: 229 SEDMMDVGMDSPVPSTSTANIPMSERLKGHTIILSDEVKKIKT---EPIIPASLMERLEK 399
           ++ + D G+    PS   A I  S+    H I L D V        +P++PA+LM R  +
Sbjct: 103 ADSLQDAGIPCFGPSQKAAQIEASKDFAKHFIKLIDTVDLEGGPVGKPVVPAALMNRPTR 162

Query: 400 PSMSLVVW 423
                  W
Sbjct: 163 GERRFAYW 170


>SB_34337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 253 MDSPVPSTSTANIP--MSERLKGHTIILSDEVKKIKT-EPIIPASLMERLEKPSMSLVVW 423
           +DS +PS +   IP  M E ++G  +I + +++     +P++PA+LM R  +       W
Sbjct: 71  VDSKIPSGTKFEIPKVMQEFVQGIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 130


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +1

Query: 88   KAGW*LQAPPAEPLSLRPAKQ---LITEEKMAAHLNGLHISTEYTSHSLASEDMMDVGMD 258
            +AG   + PP   ++L  A+Q   ++ +EK+      + ++ +   + + + D++ + + 
Sbjct: 1226 RAGDRSRLPPGSWVTLEEAEQEIYIMPDEKLTGSHKFVLVAVDPADNKMKTHDVITIKVS 1285

Query: 259  SPVPSTS 279
             PVP T+
Sbjct: 1286 EPVPPTT 1292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,948
Number of Sequences: 59808
Number of extensions: 317730
Number of successful extensions: 1436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)