Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30514
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 36 0.016
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 36 0.016
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 30 1.1
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 29 2.5
At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransfer... 28 4.3
At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransfer... 28 4.3
At2g10440.1 68415.m01097 hypothetical protein 28 4.3
At5g52540.1 68418.m06519 expressed protein contains PF05684: Pro... 27 7.5
At3g30280.1 68416.m03824 transferase family protein similar to d... 27 7.5
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 27 7.5
At5g16530.1 68418.m01933 auxin efflux carrier family protein con... 27 9.9
At5g08550.1 68418.m01017 expressed protein 27 9.9
At3g53780.2 68416.m05942 rhomboid family protein contains PFAM d... 27 9.9
At3g53780.1 68416.m05941 rhomboid family protein contains PFAM d... 27 9.9
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 27 9.9
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 135 EGQWLCRRCLQSPSR--LVNCVLCPNTGG 55
EG W CR+CL S +R + +C LC GG
Sbjct: 192 EGDWFCRQCLSSKNREKIFSCCLCTTKGG 220
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 135 EGQWLCRRCLQSPSR--LVNCVLCPNTGG 55
EG W CR+CL S +R + +C LC GG
Sbjct: 192 EGDWFCRQCLSSKNREKIFSCCLCTTKGG 220
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 332 DKIIVCPFNLSLIGMLAVEVEGTGLSIPTSIISSEAREC----DVYSVDIWSPFRC 177
D +IV P + + V V+ TG++I + +E +C D VDI P +C
Sbjct: 527 DVVIVEPMKCNKVTKCEVNVDTTGVNIVEPMKCNEVTKCEVNVDTIGVDIVEPMKC 582
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 126 WLCRRCLQSPSRLVNCVLCPNTGG 55
W+CR C ++P +C LCP GG
Sbjct: 533 WVCRAC-ETPDIERDCCLCPVKGG 555
>At3g48330.2 68416.m05275 protein-L-isoaspartate O-methyltransferase
/ PIMT (PCM) identical to SP|Q42539
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
(Protein- beta-aspartate methyltransferase) (PIMT)
(Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
protein carboxyl methyltransferase) {Arabidopsis
thaliana}
Length = 230
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 268 PSTSTANIPMSERLKGHTIILSDEVKK 348
PS+ N M E L+ H I+ SDEV K
Sbjct: 7 PSSINKNKAMVENLQNHGIVTSDEVAK 33
>At3g48330.1 68416.m05274 protein-L-isoaspartate O-methyltransferase
/ PIMT (PCM) identical to SP|Q42539
Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
(Protein- beta-aspartate methyltransferase) (PIMT)
(Protein L-isoaspartyl methyltransferase) (L-isoaspartyl
protein carboxyl methyltransferase) {Arabidopsis
thaliana}
Length = 230
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 268 PSTSTANIPMSERLKGHTIILSDEVKK 348
PS+ N M E L+ H I+ SDEV K
Sbjct: 7 PSSINKNKAMVENLQNHGIVTSDEVAK 33
>At2g10440.1 68415.m01097 hypothetical protein
Length = 935
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +1
Query: 103 LQAPPAEPLSLRPAKQLITEEKMAAHLNGLHISTEYTSHSLASEDMMDVGMDSPVPSTST 282
L PP EP++ RP +LI + AA L S S ++ DM+ S S +
Sbjct: 647 LFVPPPEPITERPIDRLI-KAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAG 705
Query: 283 ANIPMSERLKGHT 321
+SER + T
Sbjct: 706 LGEDLSERTRNFT 718
>At5g52540.1 68418.m06519 expressed protein contains PF05684:
Protein of unknown function (DUF819)
Length = 461
Score = 27.1 bits (57), Expect = 7.5
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 413 RDILGFSN-LSISEA-GIMGSVLIFLTSSDKIIVCPFNLSLIGMLAVEVEGTGLSIPTSI 240
R I G N ++IS A G+ SVL ++D +I C + + L ++ + PT+I
Sbjct: 214 RHIGGAVNYVAISNALGVTPSVLAAGLAADNVI-CAVYFTTLFALGSKIPAEAVPPPTTI 272
Query: 239 ISSEARECDVYSVDIWSPFRCAAIFSSVINCFAGLRDSGSAGGACSHHPALSTVYYV 69
+ +E E I I S+ C AG + G + PA++ V +
Sbjct: 273 VDAETNEASETKNKIPVLLIATGIAVSLAICKAGALLTKYFGISGGSLPAITAVVVI 329
>At3g30280.1 68416.m03824 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034], alcohol
acyltransferase [Fragaria x
ananassa][GI:10121328][PMID:10810141]
Length = 443
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 208 YTSHSLASEDMMDVGMDSPVPSTSTANIPMSERLKGHTIILSDE 339
YT L S + + + + T T P++ R+KG TI +DE
Sbjct: 47 YTKDDLISPEQSSHKLKTSLAETLTKFYPLAGRIKGVTIDCNDE 90
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 226 ASEDMMDVGMDSPVPSTSTAN--IPMSERLKGHTIILSDEVKKIKTEPIIPASLMERLEK 399
+S+D++ + + + + ST + +S KG T + KI + IIPASL + +E+
Sbjct: 751 SSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEE 810
Query: 400 PS 405
S
Sbjct: 811 KS 812
>At5g16530.1 68418.m01933 auxin efflux carrier family protein
contains auxin efflux carrier domain, Pfam:PF03547
Length = 351
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 350 IFLTSSDKIIVCPFNLSLIGMLAVEVEGTGLSIPTSII 237
IF+ +K+IVC +L+++GM+ + G SI+
Sbjct: 274 IFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIV 311
>At5g08550.1 68418.m01017 expressed protein
Length = 908
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 268 PSTSTANIPMSERLKGHTIILSDEVKKIK 354
P+TS +PMS++ + L D VKK+K
Sbjct: 343 PATSVDTLPMSQQAELAKKALKDNVKKLK 371
>At3g53780.2 68416.m05942 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 394
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 280 WRLKVQGCPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQV*G 131
WRL C +LH + L + M TLL G+R++ F+++ ++ + G
Sbjct: 140 WRLL--SCNWLHGGVVHLLMN-MLTLLFIGIRMEREFGFIRIGLLYLISG 186
>At3g53780.1 68416.m05941 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 270
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 280 WRLKVQGCPYLHPSYLRRLESVMYTLLIYGVRLDARPFFLQLSIVLQV*G 131
WRL C +LH + L + M TLL G+R++ F+++ ++ + G
Sbjct: 16 WRLL--SCNWLHGGVVHLLMN-MLTLLFIGIRMEREFGFIRIGLLYLISG 62
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 240 DGCRYGQPCTFNLHCQHTYERE 305
+GC YG+ CTF LH + + RE
Sbjct: 185 EGCPYGESCTF-LHDEASRNRE 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,879
Number of Sequences: 28952
Number of extensions: 224213
Number of successful extensions: 619
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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