Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30513
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 505 RLWRQVHYYSLRNLTPVPGGVPDLFILGCLFFQFP 401
           +++  +H Y    L+P+P  V     +G  ++  P
Sbjct: 386 KMYADMHQYGYNTLSPLPSSVHSHSTIGNDYYNSP 420


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190  WCCIYGQFSGLLAPSLIVL*ILISFVPL 107
            WC + G    L  PS+ +L IL S + L
Sbjct: 1027 WCIVPGIIYLLSIPSMYLLLILYSIINL 1054



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 408  WKKRQPRIKRSGTPPGTGVKFRR 476
            +KKR  ++  +GT  GT V  RR
Sbjct: 1438 FKKRFAKLNANGTNAGTPVLSRR 1460


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190  WCCIYGQFSGLLAPSLIVL*ILISFVPL 107
            WC + G    L  PS+ +L IL S + L
Sbjct: 1027 WCIVPGIIYLLSIPSMYLLLILYSIINL 1054



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 408  WKKRQPRIKRSGTPPGTGVKFRR 476
            +KKR  ++  +GT  GT V  RR
Sbjct: 1438 FKKRFAKLNANGTNAGTPVLSRR 1460


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190  WCCIYGQFSGLLAPSLIVL*ILISFVPL 107
            WC + G    L  PS+ +L IL S + L
Sbjct: 1027 WCIVPGIIYLLSIPSMYLLLILYSIINL 1054



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 408  WKKRQPRIKRSGTPPGTGVKFRR 476
            +KKR  ++  +GT  GT V  RR
Sbjct: 1438 FKKRFAKLNANGTNAGTPVLSRR 1460


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190  WCCIYGQFSGLLAPSLIVL*ILISFVPL 107
            WC + G    L  PS+ +L IL S + L
Sbjct: 1027 WCIVPGIIYLLSIPSMYLLLILYSIINL 1054



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 408  WKKRQPRIKRSGTPPGTGVKFRR 476
            +KKR  ++  +GT  GT V  RR
Sbjct: 1438 FKKRFAKLNANGTNAGTPVLSRR 1460


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 122 YEYLQNNQA 148
           YEY +NNQA
Sbjct: 33  YEYYENNQA 41


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 122 YEYLQNNQA 148
           YEY +NNQA
Sbjct: 24  YEYYENNQA 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,844
Number of Sequences: 336
Number of extensions: 1709
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)