Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30513
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    29   2.9  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    28   5.1  
12_02_0521 - 19955475-19956076,19957146-19958403                       27   8.9  
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     27   8.9  

>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 RTICPGNWKKRQPRIKRSGTPPG 455
           R++CPG W +R    + +GT PG
Sbjct: 145 RSLCPGEWVERWNEQRENGTFPG 167


>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
            39586479-39586640,39586753-39586877,39586992-39587030,
            39587290-39587476,39587643-39587713,39589371-39589564,
            39589656-39589767,39589899-39590082,39590177-39590503,
            39590780-39591061,39591148-39591621,39591730-39591813,
            39591850-39591939,39592024-39592247,39592503-39592600,
            39592679-39593169,39593249-39593520,39594266-39594522,
            39594672-39594890,39595007-39595167,39595249-39595441,
            39595528-39595633,39595947-39596121,39596404-39596556,
            39596663-39596794,39597120-39597184,39597754-39597819,
            39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
 Frame = +2

Query: 260  LEQTFKEKGFLIQ--TQQLQSAEGATYCKFRQLR---------KFTRYLFRSWKDYLPGE 406
            L  +F  KG L++  T   Q   GA YC + +L            TRYLF S KD   GE
Sbjct: 1182 LGYSFSVKGLLVEALTHPSQQELGAKYC-YERLEFLGDAVLDILLTRYLFNSHKDTNEGE 1240

Query: 407  LEE 415
            L +
Sbjct: 1241 LTD 1243


>12_02_0521 - 19955475-19956076,19957146-19958403
          Length = 619

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 357 FRNCRNL--Q*VAPSADCSCCVCMRNPFSLNVC 265
           ++ CRN+  Q   P+ +C C VC       N+C
Sbjct: 250 YKRCRNIACQSALPAEECRCNVCSNRNGFCNLC 282


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 324 ERPTVNFDNYGNSQGT-YSGVGRTICPGNWKKRQPRIKRSGTPPG 455
           ER  +     G+ + T Y+   R++CPG W +R    + +GT  G
Sbjct: 5   ERWCIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,782
Number of Sequences: 37544
Number of extensions: 207567
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)