Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30513
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020563-1|AAH20563.1|  764|Homo sapiens three prime repair exon...    29   9.7  
BC014153-1|AAH14153.2|  764|Homo sapiens three prime repair exon...    29   9.7  
AF451323-1|AAL38042.1|  791|Homo sapiens ATR-interacting protein...    29   9.7  

>BC020563-1|AAH20563.1|  764|Homo sapiens three prime repair
           exonuclease 1 protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 390 TICPGNWKKRQPRIKRSGTPPGTG 461
           T  PG+ ++ +P   R G PPGTG
Sbjct: 4   TSAPGSKRRSEPPAPRPGPPPGTG 27


>BC014153-1|AAH14153.2|  764|Homo sapiens three prime repair
           exonuclease 1 protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 390 TICPGNWKKRQPRIKRSGTPPGTG 461
           T  PG+ ++ +P   R G PPGTG
Sbjct: 4   TSAPGSKRRSEPPAPRPGPPPGTG 27


>AF451323-1|AAL38042.1|  791|Homo sapiens ATR-interacting protein
           protein.
          Length = 791

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 390 TICPGNWKKRQPRIKRSGTPPGTG 461
           T  PG+ ++ +P   R G PPGTG
Sbjct: 4   TSAPGSKRRSEPPAPRPGPPPGTG 27


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,878,968
Number of Sequences: 237096
Number of extensions: 1142879
Number of successful extensions: 2615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2615
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)