Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30513
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati...    27   5.7  
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil...    27   7.5  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   7.5  
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    27   9.9  
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot...    27   9.9  
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    27   9.9  

>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
           similar to subunit 6b of cytochrome c oxidase
           [Arabidopsis thaliana] gi|6518353|dbj|BAA87883
          Length = 78

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 387 RTICPGNWKKRQPRIKRSGTPPG 455
           R +CPG W  +    + SGT PG
Sbjct: 54  RALCPGEWVDKWNEQRESGTFPG 76


>At5g48160.1 68418.m05949 tropomyosin-related contains weak
           similarity to Tropomyosin, muscle (Allergen Ani s 3).
           (Swiss-Prot:Q9NAS5) [Anisakis simplex]
          Length = 574

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 357 FRNCRNL--Q*VAPSADCSCCVCMRNPFSLNVC 265
           ++ CRN+  Q   P+ DC C +C       N+C
Sbjct: 195 YKRCRNIACQNQLPADDCYCDICTNRKGFCNLC 227


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 399 PGNWKKRQPRIKRSGTPPGTGVKFRRE 479
           P +W  R P+ K S + PG   K R+E
Sbjct: 413 PQSWPSRAPKSKNSRSFPGENKKHRKE 439


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 417 RQPRIKRSGTPPGTGVKFRRE 479
           +QP++ + G PPG+G+K + E
Sbjct: 258 QQPKVVKRGRPPGSGLKKQLE 278


>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 580

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 417 RQPRIKRSGTPPGTGVKFRRE 479
           +QP++ + G PPG+G+K + E
Sbjct: 259 QQPKVVKRGRPPGSGLKKQLE 279


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 417 RQPRIKRSGTPPGTGVKFRRE 479
           +QP++ + G PPG+G+K + E
Sbjct: 258 QQPKVVKRGRPPGSGLKKQLE 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,130,461
Number of Sequences: 28952
Number of extensions: 156533
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)