Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30505
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  29   1.7  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.3  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      29   2.3  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       27   6.9  

>SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 352

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 277 KKMIKLSLIIQKFFIMWYSPYCSLFYHVR*ELLPHL 170
           +K IK++ +I   F+M Y PY  +F  +  +++P L
Sbjct: 244 RKFIKMTFMIMVLFVMCYLPYQIVFLLIHFDVVPGL 279


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 281 GKKNDKIESHHSEVLYNVVFSLLFSILPRKIGATSSSSRAVAI 153
           GK +  IE H  +   N+      +  PR+  +TSS+S AVA+
Sbjct: 283 GKNSANIEYHCDKETTNITMETTNAHAPRRTPSTSSTSSAVAL 325


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 227 VFSLLFSILPRKIGATSSSSRAVAIKANSIYPCS-QH*HVRSEYPSHSHLVTYT 69
           +FS++ SI+     A+S+SS + +    S+   S QH H R  +  H H + Y+
Sbjct: 26  IFSVI-SIITASSSASSTSSTSPSASVYSVSSASLQHLHQRHRHHQHHHQLQYS 78


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 182 TSSSSRAVAIKANSIYPCSQH*HVRSEYPSHSHLVTYTPTLS*LCFVSFSDTT 24
           T+S +   +  +   Y C+      +  PS++   +YTPT S  C  S++ TT
Sbjct: 17  TTSYTHTTSYTSTPSYTCTTS---YTSTPSYTSTTSYTPTPSYTCTTSYTSTT 66


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -2

Query: 191 IGATSSSSRAVAIKANSIYPCSQH*HVRSEYPSHSHLVTY-----TPTL 60
           I ++SSSS A A  ++S    S H H    +  H H   Y     TPTL
Sbjct: 185 ITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALYKLRQHTPTL 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,765
Number of Sequences: 59808
Number of extensions: 264487
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)