Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30503
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 33 0.11
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 32 0.26
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 32 0.26
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 29 1.4
At3g25950.1 68416.m03234 hypothetical protein 29 2.5
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 3.2
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 3.2
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 7.5
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 9.9
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 9.9
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 27 9.9
At2g20950.4 68415.m02474 expressed protein 27 9.9
At2g20950.3 68415.m02473 expressed protein 27 9.9
At2g20950.2 68415.m02472 expressed protein 27 9.9
At2g20950.1 68415.m02471 expressed protein 27 9.9
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 239 SSGY--TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 400
S GY T+P +P TY + GY P S A+ PT+P+ P P Y + Y T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 215 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 370
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 215 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 370
D S + + +P P+ + + A G+ P GAH P P P P+P +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 266 TPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 412
+P ++T A A+ P+ A +P PAP P P + + + + P PE
Sbjct: 13 SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 408 GLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 307
GL G V++Y MA G G GVV RWA W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPLPIPDYIA 370
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPLPIPDYIA 370
I A G+ P GAH P P P+P +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 130 ENVSILRHNLGISFASAHDVRNVSDGYRDQSEEDVSS 20
E+ +ILR+ LG + S +DV N ++ Y QS + ++S
Sbjct: 166 ESFNILRYELGQKYDSHYDVFNPTE-YGPQSSQRIAS 201
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPLPIPDYIA 370
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 287 IADANGYQPSGAHLPTTPAPLPIPDYIA 370
+ G+ P GAH P P P P+ +A
Sbjct: 224 VPKVGGFPPLGAHGPFQPTPAPLTTSLA 251
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 311 PSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 409
PS H P P P P+PD+ + + + PP P
Sbjct: 46 PSSVHRPYPPPP-PLPDFAPQPLLPPPSPPPPP 77
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 124 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 258
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 124 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 258
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 124 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 258
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 124 RFPGQIPVPISDQQRNQWPGTRSARKRGP*GCIHRRPRFKRLHCP 258
R + PISD+Q W + A +R P H+RP R P
Sbjct: 49 RSESEYAFPISDEQTTHWKPQQQASERIPNS--HQRPPVYRYSTP 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,929
Number of Sequences: 28952
Number of extensions: 225855
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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