Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30501
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 29 0.31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 29 0.31
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 0.72
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 27 1.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 2.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.2
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 26 2.9
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 2.9
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 2.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 3.8
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 6.7
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 6.7
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 25 8.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 8.9
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 8.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 62 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 154
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 62 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 154
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 0.72
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 261 IYRMKSVGESTEPCGTPALMV 199
+YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 188 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 352
S +T+ + VP+ S FI Y + +LSI + C+ ++ ++++ +
Sbjct: 39 SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 131 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 229
W SFL G+ +TVV + S+ IN +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 212 GVPQGSVLSPTLFILYINDML 274
G+PQGS+LS L Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 270 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 184
MSL+Y +SVG T PCG+ + ++ Q
Sbjct: 1 MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 212 GVPQGSVLSPTLFILYINDM 271
G PQGS++SP L +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 180 PSTTTVMLRPSKKLA--IHLQRPSGIP*DGNFDRSALCQTLSKAFAISRLTARASPLLSK 7
PS+T + PS A +H Q+P D + D +A+ + +RL+ PLLS
Sbjct: 207 PSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSN 266
Query: 6 A 4
+
Sbjct: 267 S 267
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 221 QGSVLSPTLFILYINDMLSIDGMHCY 298
+ S L+ +L LY+ D + ID H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 234 STEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQRP 118
S++P GTP + SPSTT V + I+ + P
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 430 IELSSIQPVEDTGLRVHCEEGPLCH 504
+EL+ + P+E TGL + EG H
Sbjct: 325 VELNDVCPIEGTGLILTANEGSPMH 349
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 249 SSCISMTCCLLMACIAMQMIARGMRDISAIRVSLGAW 359
S +S CLL A+ + R +DI+ +R SLG +
Sbjct: 3 SLMLSRARCLLELRSALFFVKRESQDINNVRQSLGVY 39
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 336 IRVSLGAWCKRDDQNLCLKW 395
IR +G +CK D N C +W
Sbjct: 412 IRSEIGEYCKTLDINSCREW 431
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 373 SSLLHHAPRETLMADISRIP 314
S+++ P ET +AD+SR+P
Sbjct: 441 SAVITRNPSETSLADLSRVP 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,188
Number of Sequences: 5004
Number of extensions: 47423
Number of successful extensions: 134
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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