Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30501
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim... 29 1.9
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 29 2.5
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ... 29 2.5
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim... 28 3.2
At1g43720.1 68414.m05023 hypothetical protein 28 3.2
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa... 27 5.7
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 27 7.5
At5g08270.1 68418.m00974 expressed protein 27 7.5
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con... 27 7.5
At1g01680.1 68414.m00086 U-box domain-containing protein 27 7.5
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 27 9.9
At5g08660.1 68418.m01031 expressed protein contains Pfam domain ... 27 9.9
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 27 9.9
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 27 9.9
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi... 27 9.9
At3g03870.2 68416.m00400 expressed protein predicted using genef... 27 9.9
At3g03870.1 68416.m00399 expressed protein predicted using genef... 27 9.9
>At1g59700.1 68414.m06716 glutathione S-transferase, putative
similar to glutathione S-transferase GB:AAF29773
GI:6856103 from [Gossypium hirsutum]
Length = 234
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 8 LXSKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 157
L + + SL+I + D W+ + S LPS+ L ++ + F+D +
Sbjct: 60 LLHNNKPIVESLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = +2
Query: 419 KWGESNLVQFNPLKTQ----VCAFTAKKDPFVMAP 511
KW E L QF P KT VCA T PF M P
Sbjct: 544 KWHEHTLAQF-PRKTSLTCNVCALTHSSCPFYMCP 577
>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
contains similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 582
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 337 MADISRIP-RAIICIAMHAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 191
+A+ IP R + IAM+A +Q V + +E +G + +W ++ GI
Sbjct: 158 IAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207
>At1g59670.1 68414.m06711 glutathione S-transferase, putative
similar to glutathione S-transferase GB:AAF29773
GI:6856103 from [Gossypium hirsutum]
Length = 233
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 29 LAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 157
+ VSL+I + D W+ + S LPS+ L ++ + F+D +
Sbjct: 67 VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109
>At1g43720.1 68414.m05023 hypothetical protein
Length = 314
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 288 CIAMQMIARGMRDISAIRVSLGAWCKRDDQNLCLKWRTLW 407
C + +I +G ++A R L W KR+D N C W W
Sbjct: 268 CSTVGIITKGST-MAANRKILTRWFKRNDSNKCSIWIFSW 306
>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
family protein low similarity to SP|P31384
Glucose-repressible alcohol dehydrogenase
transcriptional effector (Carbon catabolite repressor
protein 4) {Saccharomyces cerevisiae}; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 388
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 379 F*SSLLHHAPRETLMADISRIPRAII 302
F S+ LHH PR L+ SR+ R +I
Sbjct: 2 FSSTTLHHLPRPNLLLPSSRVCRKVI 27
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 VSEVENSLGRVSKWG-ESNLVQFNPLKTQVCAFTAKKDPFVMAPQ 514
+ E G +S+ G E +N + VC KKDPF + P+
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPE 305
>At5g08270.1 68418.m00974 expressed protein
Length = 386
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 268 VIDIQDEKRGGEHRTLWNASVNGHGIRTVTVYNDRDAPPIQK-ASDPL 128
VI+ Q RGG R +WN S IRT + + + K S PL
Sbjct: 217 VINAQPWGRGGISREVWNGSFTTPEIRTEATTTENSSDKVWKMLSRPL 264
>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 512
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 238 GEHRTLWNASVNGHGIRTVTVYNDRDAPP 152
G H LW ++N I ++ YND D PP
Sbjct: 175 GNHVKLWT-TINEANIFSIGGYNDGDTPP 202
>At1g01680.1 68414.m00086 U-box domain-containing protein
Length = 308
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 428 HPIWRLAPESSPLQTQVLIVSLAPRSERDSDGR 330
HP W L PE SP + + + + +E D D R
Sbjct: 201 HPGWILEPEESPKKGRKETIEKSKSNESDEDPR 233
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 238 GEHRTLWNASVNGHGIRTVTVYN 170
G HR W AS+ G+RT + N
Sbjct: 697 GRHRLYWKASIPALGLRTYFIAN 719
>At5g08660.1 68418.m01031 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 649
Score = 26.6 bits (56), Expect = 9.9
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Frame = +2
Query: 14 SKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKW--IASFLDGRSITVVVDGDC 187
SKG+ LA+ KA +V L S G E + K I FL + G
Sbjct: 299 SKGDGLAILKTELKAQRKVVKSLKKKSLWSRGFEEVMEKLVDIVHFLLLEIHNIF--GGA 356
Query: 188 SDTMTINAGVPQGSVLSPT-LFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQ 364
D + L P L + Y N ++ ID + A T +AR +QSL +
Sbjct: 357 DDQPSKKGAAEYDKRLGPAGLALHYANIIVQIDTLVARASSITSNARDSLYQSLPPGIKL 416
Query: 365 ERRSKLVS 388
RSK+ S
Sbjct: 417 ALRSKIKS 424
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1610
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 419 KWGESNLVQF---NPLKTQVCAFTAKKDPFVMAP 511
KW E L F PL VCA T + PF + P
Sbjct: 275 KWHEHTLSLFPRKTPLTCSVCALTHTRCPFYICP 308
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 441 TKFDSPHLETRPREFSTSDTSFDRLSCTTLRERL 340
T DSP T P+ FST + SF L L ERL
Sbjct: 612 TVLDSPAQSTGPKMFSTLEFSFQNLRTRRL-ERL 644
>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 412
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 324 RASPVLSSA*QCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTV 163
R+ ++S+ C PS + + Y ++ VG+ L V S +S STTT+
Sbjct: 20 RSEDIMSNP-DCRPSDLCLRVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTI 72
>At3g03870.2 68416.m00400 expressed protein predicted using
genefinder
Length = 266
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 277 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 194
++ V++ +DE GGE LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184
>At3g03870.1 68416.m00399 expressed protein predicted using
genefinder
Length = 234
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 277 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 194
++ V++ +DE GGE LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,948
Number of Sequences: 28952
Number of extensions: 270894
Number of successful extensions: 813
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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