Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30499
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.046
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   1.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   3.0  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   4.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   4.0  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  27   6.9  
SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)            27   9.2  
SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           27   9.2  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 322 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 465
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 319 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 447
           ED + R  +   +RI RLE    DL+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 373  EDEKFD--LEYIVKRKDMEISDLNSQVNDLRGKFVK 474
            ++EKF   L  ++ RKD  I +LN+++  L+G + K
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK 1032


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +1

Query: 319  EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSQVNDL 456
            ED +++V K     +A L+   +EK D E +++   + +++LN+Q+ DL
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDL 1949



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +1

Query: 310  DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 459
            D  E TIK + ++ +    R +DE  DL   V +K+ E   L++Q++DLR
Sbjct: 3021 DIAESTIKNIKQEKN----RFQDEVNDLHGKVSQKNSENELLHAQLDDLR 3066


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 310 DANEDTIKRVCKDYHERIARLEDE 381
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +1

Query: 313  ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 474
            A+++ I+   +    ++++++DE  +L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 298 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 435
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +1

Query: 316 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL-----RGKF-VKP 477
           NE+ +K+  +DY E++ + E EK+ L      + +E    ++Q+  +     RG F V+ 
Sbjct: 370 NEEILKKAARDYQEKLKKSE-EKYQLLKKHAEEKIETRLRHAQLAKMYTKKYRGLFHVRV 428

Query: 478 TLKKVCKY 501
           +L+ VC Y
Sbjct: 429 SLELVCCY 436


>SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)
          Length = 107

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 346 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 465
           D + ++  L  +  DL+  V   D ++ DLN++V+DL  K
Sbjct: 26  DLNAKVHDLNTKVHDLDTKVHDLDTKVHDLNTKVHDLNTK 65


>SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 322 DTIKRVCKDYHERIAR-LEDEKF---DLEYIVKRKDMEISDLNS 441
           D I+R  +     ++R LE+ K    +LE  V +KDME++DLN+
Sbjct: 6   DKIRRKLESELAEVSRQLEEAKQQIQELEAAVHKKDMELNDLNA 49


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 346 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 474
           D + ++  L  +  DL   V   + ++ DLN++VNDL  K  K
Sbjct: 348 DLNTKVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTK 390


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,563
Number of Sequences: 59808
Number of extensions: 156112
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)