Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30499
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02640.2 68417.m00359 bZIP transcription factor family protei...    32   0.26 
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    32   0.26 
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   1.4  
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit...    29   1.4  
At1g37020.1 68414.m04616 Ulp1 protease family protein                  29   1.4  
At1g11690.1 68414.m01342 hypothetical protein                          29   2.5  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   3.2  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   3.2  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   4.3  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    28   4.3  
At5g57830.1 68418.m07232 expressed protein contains Pfam profile...    27   5.7  
At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei...    27   7.5  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    27   9.9  
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl...    27   9.9  

>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 298 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 477
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 262

Query: 478 TLKKVCKYENKF 513
            LK++    +K+
Sbjct: 263 LLKQLSNMNHKY 274


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 298 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 477
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 256

Query: 478 TLKKVCKYENKF 513
            LK++    +K+
Sbjct: 257 LLKQLSNMNHKY 268


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = +1

Query: 355 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFV 471
           +++A L+ ++ +LE  +++K  EIS+  SQ+ +L+ + +
Sbjct: 879 QQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917


>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
           gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 145

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 292 KPKNIDDANEDTIKRVCKDYHERIARLED 378
           K KN++ A EDT+    K+Y + +A+L+D
Sbjct: 53  KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81


>At1g37020.1 68414.m04616 Ulp1 protease family protein
          Length = 611

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 331 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVCKYENK 510
           K+  K   +++A++++ K     ++K K M   D    V D+  K V  TLK  C +E+ 
Sbjct: 283 KKASKIPKKKMAKVKEMKVSTPKVLK-KTMRRDD--DYVGDVTEKVVADTLKMACSFEDT 339

Query: 511 FA 516
           F+
Sbjct: 340 FS 341


>At1g11690.1 68414.m01342 hypothetical protein
          Length = 247

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 298 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 477
           +N  +  E+T         E++++  +EK  ++    R   +I D+ S VN LR +  + 
Sbjct: 68  RNQRNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLKKKILDMESSVNRLRRE--RD 125

Query: 478 TLKKVCK 498
           T++KVC+
Sbjct: 126 TMEKVCE 132


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 245 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 406
           +++ L+  +S R G+    +  TPT+ +     K T+NA+ +L+      N++L
Sbjct: 40  SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 302 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 421
           TLT  TK+   G ++  + AS + + + S+WNTS     W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 361 IARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 480
           ++ L   K  L  ++++KD EIS+ NS +     K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 322 DTIKRVCKDYHERIARLEDEKFDLEYIV 405
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


>At5g57830.1 68418.m07232 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 387

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 355 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVCKYENKF 513
           E++   E      E ++ +K+MEI+ L  QV   R K +          ENKF
Sbjct: 78  EKMCHAETSLVLFEDLIYQKEMEIASLEFQVQAYRCKLLSLGCSDPAVIENKF 130


>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
           (DiGeorge syndrome critical region 14) (ES2 protein)
           (Swiss-Prot:Q96DF8) [Homo sapiens]
          Length = 508

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 307 DDANEDTIKRVC-KDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 465
           +DA  + I+++  +DY   I +L D    ++ +  R  ++I D   ++ + RGK
Sbjct: 50  EDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKTRDPIQIRDAQLKIIERRGK 103


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 403 VKRKDMEISDLNSQVNDLRGK--FVKPTLKKVC 495
           +K    ++SDL+ Q+N+++GK    K  L+K C
Sbjct: 729 LKNMQSQLSDLSHQINEVKGKASTYKQRLEKKC 761


>At1g17220.1 68414.m02098 translation initiation factor IF-2,
           chloroplast, putative similar to SP|P57997|IF2C_PHAVU
           Translation initiation factor IF-2, chloroplast
           precursor (PvIF2cp) {Phaseolus vulgaris}
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 292 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 438
           +P  +   + + +K +C+DY   +   +  K + E   KR+  +  DL+
Sbjct: 448 RPDGVHTLDREMVKMICRDYDVEVLDADSVKVE-EMAKKRQTFDEEDLD 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,414,928
Number of Sequences: 28952
Number of extensions: 106271
Number of successful extensions: 383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)