Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30495
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 351 3e-98
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 202 2e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 189 2e-49
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 142 2e-35
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 92 4e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 2e-18
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 63 3e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 2e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.7
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.9
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 8.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 351 bits (864), Expect = 3e-98
Identities = 160/171 (93%), Positives = 167/171 (97%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWD 181
FAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+ NWD
Sbjct: 21 FAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWD 80
Query: 182 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 361
DMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVL
Sbjct: 81 DMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVL 140
Query: 362 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 514
SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 202 bits (494), Expect = 2e-53
Identities = 91/170 (53%), Positives = 127/170 (74%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWD 181
FAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GII NW
Sbjct: 25 FAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWS 84
Query: 182 DMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAV 358
DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q V
Sbjct: 85 DMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPV 144
Query: 359 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 508
L+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 145 LALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 189 bits (461), Expect = 2e-49
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 2/172 (1%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITN 175
+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GII +
Sbjct: 19 YAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRD 78
Query: 176 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 355
+++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 79 FEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Query: 356 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 511
VLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 139 VLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLI 190
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 142 bits (345), Expect = 2e-35
Identities = 69/148 (46%), Positives = 95/148 (64%), Gaps = 9/148 (6%)
Frame = +2
Query: 92 DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 268
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 269 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 424
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 425 TVPIYEGYALPHAILRLDLAGRDLTDYL 508
+P+ EGY + +I + LAGRD+T ++
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFV 220
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 96.7 bits (230), Expect = 2e-21
Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNW 178
+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P E +I+NW
Sbjct: 40 WGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNW 95
Query: 179 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAV 358
D ME++ +TF +L + EHP+ +TE NP R MT+++FE +N+P++ I +
Sbjct: 96 DLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGL 154
Query: 359 LSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 514
S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K
Sbjct: 155 FSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLK 208
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 92.3 bits (219), Expect = 4e-20
Identities = 54/169 (31%), Positives = 83/169 (49%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWD 181
F+G+D P+ V PS G + G + Y+ +S G + +K I +G + NWD
Sbjct: 27 FSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWD 78
Query: 182 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 361
+W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 79 VTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETC 138
Query: 362 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 508
+ +ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 139 AAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 86.6 bits (205), Expect = 2e-18
Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Frame = +2
Query: 2 FAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIITN 175
+AG+++P + PS + GV + ++ YV DE Q I + +K +GII +
Sbjct: 26 YAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQD 79
Query: 176 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 355
W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QA
Sbjct: 80 WESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQA 139
Query: 356 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 487
V +A+ ++T +++D G + P+ +G + I + LAG
Sbjct: 140 VCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 62.9 bits (146), Expect = 3e-11
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Frame = +2
Query: 149 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 316
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 317 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 496
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 497 TDYL 508
T +L
Sbjct: 232 TQHL 235
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 43.6 bits (98), Expect = 2e-05
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Frame = +2
Query: 98 YVGDEAQSKRGILTLKYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 265
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 266 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 403
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 404 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 508
SG +H +P+ + A+ R+D+ G+ LT+YL
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYL 197
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 8 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 151
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 209 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 352
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 435 STKVTLCPTPSSVWTW 482
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 251 LLTEAPLNPKANREKMTQIMFETFN 325
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 204 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFWPIPTITPWW 58
WC+ S + SQ+ + +G F PL L WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQISSLSN----PLITPWW 346
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 436 LRRLRSAPRHPPSGLGWSRLDRLPHED 516
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 68 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 154
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 172 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 68
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +3
Query: 420 PTPYPSTKVTLC-PTP 464
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 404 SGDGVSHTVPIYEGYALP 457
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,210
Number of Sequences: 5004
Number of extensions: 40678
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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