Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30494
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    33   0.025
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    28   0.72 
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    27   2.2  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   2.2  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   3.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   5.1  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   6.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.9  

>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +1

Query: 382 NESEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           N   ++ E ++ N  I +Q++   +  +  +++LLLGA +SGKST
Sbjct: 5   NGLSESGESKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKST 49


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 418 NHAINQQLKQDRELYQATHRLLLLGAG 498
           N+A+NQ  ++DREL Q  H L LL  G
Sbjct: 493 NNAVNQLSEKDRELPQIEHILPLLRRG 519


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 427 INQQLKQDRELYQATHRLLLL 489
           +N +LK DRE+YQ   + L +
Sbjct: 103 VNMELKSDREMYQLVQKFLAI 123


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 28  PTFDTMYL*SLVISGRDIS 84
           PTF+TM L SL+I+G D S
Sbjct: 733 PTFETMGLYSLLIAGEDTS 751


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/14 (71%), Positives = 14/14 (100%)
 Frame = +1

Query: 475 RLLLLGAGESGKST 516
           ++LLLGAG+SGK+T
Sbjct: 76  KVLLLGAGDSGKTT 89


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 223 VLLRRHISYATVVSSAHEFIANLATKYPQLKSE 125
           V L R ++ AT++S A E+I +L +K  +L  E
Sbjct: 473 VPLSRKLNKATILSKATEYIKSLQSKNKKLIEE 505


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +1

Query: 364 SLGGHRNESEDAKEQRRRNHAINQQ--LKQDR-----ELYQATHRLLLLGAGESGKST 516
           S+   +  S+  K Q+  N + N    L QD+     +L +   +LLLLG  +SGK T
Sbjct: 238 SVKSMKKVSQQLKPQKNTNDSNNDHTLLSQDQLIELSKLVKPRTKLLLLGPPKSGKKT 295


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 256 PSPTRPWYCAPVLLRRHISYATVVSSAHEFIANLATKYPQLKSEASSLP 110
           P+P    Y    L + + ++ TVV+S+HE IA+  + +    S  S  P
Sbjct: 104 PNPATRSYMLTQLFQIN-THGTVVNSSHETIASATSLFENSSSNFSEDP 151


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 465  LVQLSILFELLIYGMVPSSLLLRVF 391
            L Q S LFE L YG +   L+++V+
Sbjct: 1200 LCQGSSLFEFLRYGRIEDELVIQVY 1224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,751
Number of Sequences: 5004
Number of extensions: 35551
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)