Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30494
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 31 0.55
06_03_0332 + 19652207-19652995 29 1.7
01_06_0777 + 31919196-31919909,31919984-31920082 29 2.2
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 28 3.9
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 28 3.9
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 28 3.9
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 28 5.1
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 28 5.1
09_05_0019 - 20103044-20103760 27 6.8
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 27 6.8
07_03_0330 - 16855654-16855981,16856462-16856484 27 8.9
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 27 8.9
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 31.1 bits (67), Expect = 0.55
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 339 LAPPTGR-SGGFYRVLVGVRERFGSLRALPLRRGRGTALQSYSVGILATLLLFHRHM 172
L PP+GR SGG RV RER G R + +RRG G +++ G L+L R +
Sbjct: 344 LFPPSGRESGGGDRV---ARERRGGDRGVRMRRGMGMVDATHADGRRWLLILVAREI 397
>06_03_0332 + 19652207-19652995
Length = 262
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -3
Query: 274 RLPARSPSPTRPW 236
R PA SPSPTRPW
Sbjct: 222 RSPAMSPSPTRPW 234
>01_06_0777 + 31919196-31919909,31919984-31920082
Length = 270
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 316 WRVLPRPGRREGEIRLPARSPSPTRPWYCAP 224
W L P R P+R+ P +PW C P
Sbjct: 55 WEPLGAPPRPAAAAASPSRAALPDKPWVCDP 85
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 306 YRVLVGVRERFGSLRA-LPLRRGRGTALQSYSVGILATLLLFHRHMNSL 163
Y+ + G R+R S+ A L G A+ S V ++A+LLL RH SL
Sbjct: 1074 YQTISGTRQRAMSIHANSALISGVSLAIFSLFVLLVASLLLICRHRRSL 1122
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 514 STSRTRRRPAGEAGASLGTAL 452
+TSR RR+PA EAG G++L
Sbjct: 92 TTSRPRRKPAAEAGGGGGSSL 112
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 ESLPHADQDAVEPATPTC-WWGKWSSMGCFKSLGGHRNESEDAKEQRRRNHAINQQL 441
E L H+ D +P T WG S M +++G R E +K QRR Q L
Sbjct: 574 EKLLHSVPDKFQPLISTIEQWGDVSEMTVTETIGRLRAFEESSKGQRRDKEGEQQLL 630
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 324 GRSGGFYRVLVGVRERFGSLRAL 256
G GG Y+V G+ E FG LR L
Sbjct: 84 GHYGGSYKVTKGLAEMFGDLRVL 106
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 324 GRSGGFYRVLVGVRERFGSLRAL 256
G GG Y+V G+ E FG LR L
Sbjct: 101 GHYGGSYKVTKGLAEMFGDLRVL 123
>09_05_0019 - 20103044-20103760
Length = 238
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 402 GAEKTEPCHKSTAQTR*RAVPSDAPASPAGRRRVRE 509
G PC ++A+ + + V + P PAGR + RE
Sbjct: 10 GESSGSPCSSASAERQHQTVWTAPPKRPAGRTKFRE 45
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 27.5 bits (58), Expect = 6.8
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Frame = -3
Query: 268 PARSPSPTRPWYCA-----PVLLRRHISYATVVSSAHEFIANLATKYPQLKSEASSLP*H 104
P P P +P CA LL RH++ A S +A L P + S P
Sbjct: 6 PGPGPGPRKPACCAVTFGRSTLLGRHLAAALAASGRWSTVAVLDPSPPTTTTTTSPPPGS 65
Query: 103 SLDNHYS*YHAHLSLVITGTLYRMLA 26
L +H H + L +L R LA
Sbjct: 66 PLAHH----HLAVDLCDPASLARALA 87
>07_03_0330 - 16855654-16855981,16856462-16856484
Length = 116
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 334 GKWSSMGCFKSLGGHRNESEDAKEQRRRNHA 426
G W G S GG R A+ +RRR H+
Sbjct: 9 GGWKRGGAAASGGGGRERGTAAESERRRGHS 39
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 347 DDHLPHQQVGVAGSTASWSA*GRDSAPCALSLSDEAVVLRSSL 219
+D LP +Q+G G+ A+ R SAP L D SS+
Sbjct: 318 EDRLPCRQLGWRGNPANLMISDRPSAPSVDRLDDSKCTTESSI 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,025,476
Number of Sequences: 37544
Number of extensions: 282753
Number of successful extensions: 932
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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