Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30494
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)                37   0.009
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)                      35   0.046
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     28   4.0  
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   28   4.0  
SB_14186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         27   9.2  

>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = +1

Query: 388 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           SE+AKE++R N  I +Q++QD+   +   +LLLLG GESGKST
Sbjct: 6   SEEAKERKRINAEIEKQIRQDKRNQRRELKLLLLGTGESGKST 48


>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +1

Query: 388 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           +++  EQR ++  I++Q+ Q++   +   ++LLLGAGESGKST
Sbjct: 217 TQEEAEQRAQSQKIDKQIAQEKAQLRRQVKILLLGAGESGKST 259


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +1

Query: 388 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           S + K    R+  I++ L+ D E      +LLLLGAGESGKST
Sbjct: 6   SAEDKAAAERSKMIDKNLRADGERAAREVKLLLLGAGESGKST 48


>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 315

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +1

Query: 415 RNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           R+ AI + LK +    +   +LLLLGAGESGKST
Sbjct: 15  RSKAIEKNLKLEGARAERDVKLLLLGAGESGKST 48


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -1

Query: 306  YRVLVGVRERFGSLRALPLRRGRGTALQSYSVGILATLLLFHRHMNSLQI*PQSIHNSSP 127
            Y V   V +RF  L    +   R   + +YS+  L     FH+HM S+ +    I  S  
Sbjct: 1874 YLVTRHVLQRFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKIVRSFV 1933

Query: 126  RRLRXLD 106
            RRL  ++
Sbjct: 1934 RRLSEIE 1940


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 394 DAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           + K   +R+  I+  L Q+RE      +LL L +G SGKST
Sbjct: 15  ELKAAFKRSQHIDALLDQERERKSQEIQLLTLVSGNSGKST 55


>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 198 TLLLFHRHMNSLQI*PQSIHNSSPRRLRXLDTHLTIT 88
           +LL F +++NS+    +  H  SP R+  LDT++ +T
Sbjct: 114 SLLNFLQYINSIHPTIKFTHEYSPTRINFLDTYIHVT 150


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = -3

Query: 352 PLMTTCPTNR*EWRVLPRPGRREGEIRLPARSPSPTRPWYCAPVLLRRHI-----SYATV 188
           P  T  P +R +WRV PRP +R  +  LP   PS       +P+ L   I     S A  
Sbjct: 177 PKTTEDPMDR-DWRVGPRPQQRSADAPLP-HDPSKESHVTASPINLDWRIRQPLDSDAVS 234

Query: 187 VSSAHEFIANLATK 146
           V SA +  +++ T+
Sbjct: 235 VGSAEDDRSSVGTR 248


>SB_14186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 350 IDDHLPHQQVGVAGSTASWSA*GRDSAPCALSLSDEAVVLRSSLT 216
           +DD+   + V +  +T   S  G   APC+ +LS   VV+  S+T
Sbjct: 29  LDDYFEIRDVNIVMTTPLRSLNGEWDAPCSGALSAAGVVVTRSVT 73


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 373 GHRNESEDAKEQRRRNHAINQQLKQDRELYQATHR 477
           G + E +   EQ      INQ+L+ DR+  +A H+
Sbjct: 703 GMQREQQSLIEQLDMLREINQKLRDDRDAIEAAHQ 737


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,755
Number of Sequences: 59808
Number of extensions: 296207
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)