Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30494
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   10.0 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   10.0 

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 301 RPGRREGEIRLPARSPSPTRPWYCAPVLLRRHISYATVVSS 179
           R G +E E RLP   P   R     P LL R IS  T   S
Sbjct: 627 RDGTQETEERLPPLPPKRIRKMPSMP-LLPRPISCHTTPDS 666


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 256 PSPTRPWY 233
           PSP  PWY
Sbjct: 204 PSPKTPWY 211


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 23  LCQHSIQCTCN 55
           +C   +QC+CN
Sbjct: 78  ICAEGMQCSCN 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,447
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)