Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30494
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p...    38   0.003
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe...    29   1.9  
At5g17670.1 68418.m02071 expressed protein                             28   3.2  
At4g32020.1 68417.m04558 expressed protein NuLL                        28   3.2  
At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain...    28   4.3  
At2g34590.1 68415.m04250 transketolase family protein similar to...    28   4.3  
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet...    28   4.3  
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    27   5.7  
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat...    27   7.5  
At3g47090.1 68416.m05113 leucine-rich repeat transmembrane prote...    27   9.9  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    27   9.9  

>At2g26300.1 68415.m03156 guanine nucleotide binding protein
           (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
           identical to SP|P18064 Guanine nucleotide-binding
           protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
           thaliana}
          Length = 383

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +1

Query: 349 MGCFKSLGGHRNESEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKST 516
           MG   S   H  E  D   Q      I ++++Q+ +  +   +LLLLGAGESGKST
Sbjct: 1   MGLLCSRSRHHTEDTDENTQAAE---IERRIEQEAKAEKHIRKLLLLGAGESGKST 53


>At3g09070.1 68416.m01066 glycine-rich protein similar to
           hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
          Length = 685

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 331 WGKWSSMGCF--KSLGGHRNESEDAKEQRRR 417
           WGKWS +G    KS+  +  E E+ +++ RR
Sbjct: 541 WGKWSILGLIYRKSVNKYEEEEEEEEDRYRR 571


>At5g17670.1 68418.m02071 expressed protein
          Length = 309

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 286 EGEIRLPARSPSPTRPWYCAPVLLRRHISY 197
           +G    P  S   TRPWY +PV+++  I +
Sbjct: 277 DGVYHSPVGSDDETRPWYGSPVIVKDWIHH 306


>At4g32020.1 68417.m04558 expressed protein NuLL
          Length = 181

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 313 RVLPRPGRREGEIRLPARSPSPTRPWYCAPVLL 215
           R+ P PG   G+IRL  R  S + P+Y  PV +
Sbjct: 119 RIGPDPGLIPGQIRLSGRK-SKSAPFYAGPVTM 150


>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 170

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 292 RREGEIRLPARSPSPTRPWYCAPVL 218
           +  GEIR  A++ S  RPW CA ++
Sbjct: 82  QHNGEIRGGAKASSAGRPWLCACII 106


>At2g34590.1 68415.m04250 transketolase family protein similar to
           SP|O66113 Pyruvate dehydrogenase E1 component, beta
           subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 406

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 324 GRSGGFYRVLVGVRERFGSLRAL 256
           G  GG Y+V  G+ ++FG LR L
Sbjct: 114 GHYGGSYKVTKGLADKFGDLRVL 136


>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 beta subunit [Arabidopsis thaliana] GI:2454184;
           identical to cDNA pyruvate dehydrogenase E1 beta subunit
           mRNA, nuclear gene encoding plastid protein GI:2454183
          Length = 406

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 324 GRSGGFYRVLVGVRERFGSLRAL 256
           G  GG Y+V  G+ ++FG LR L
Sbjct: 114 GHYGGSYKVTKGLADKFGDLRVL 136


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 328 WWGKWSSMGCFKSLGGHRNESEDAKE 405
           W+G+W    C  S G  +NE E+A E
Sbjct: 207 WFGRWGYKFCCGSFGVTKNEYENAIE 232


>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 583

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 241 PWYCAPVLLRRHISYATVVSSAHEFIANLATKYPQLKSE 125
           P+Y AP +LR+H S+   V SA   I  L +  P    E
Sbjct: 299 PYYVAPEVLRKHYSHECDVWSAGVIIYILLSGVPPFWDE 337


>At3g47090.1 68416.m05113 leucine-rich repeat transmembrane protein
           kinase, putative receptor kinase-like protein (Xa21),
           Oryza longistaminata, U72725
          Length = 1009

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -1

Query: 312 GFYRVLVGVRERFGSLRALPLRRGRGTALQSYSVGILATL--LLFHRHMNSLQI*PQSIH 139
           G  R+   +   FG L  L        +L SYS G LA L  L    H++ L +    + 
Sbjct: 291 GKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLG 350

Query: 138 NSSPRRLRXLDTHLTI 91
            + P  +  + T LT+
Sbjct: 351 GALPTSIVNMSTELTV 366


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 361 KSLGGHRNESEDAKEQRRRNHAINQQLKQDRELYQ 465
           +SLG  +N S++AKE     H +   L ++RE+ +
Sbjct: 634 RSLGEAKNASKEAKENVEDAHILVMSLGKEREVLE 668


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,822
Number of Sequences: 28952
Number of extensions: 202780
Number of successful extensions: 572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)