Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.24 
UniRef50_Q3BTG3 Cluster: Putative uncharacterized protein; n=2; ...    32   8.9  
UniRef50_A6LMX3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.1 bits (82), Expect = 0.24
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 457 RPAKRAGWWYLPARAYKTPYHQF 389
           R   RA WWYLPAR +K  YH++
Sbjct: 564 RLGSRAEWWYLPARTHKRSYHRY 586


>UniRef50_Q3BTG3 Cluster: Putative uncharacterized protein; n=2;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Xanthomonas campestris pv. vesicatoria (strain 85-10)
          Length = 82

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 369 LIPNNSTNWW*GVL*ARAGRYHHPARFAGRSNAFRQKE 482
           LIP + + WW GV   R+GRY  P +   R  A+R ++
Sbjct: 34  LIPVSRSTWWAGV---RSGRYPKPVKLGERCTAWRVED 68


>UniRef50_A6LMX3 Cluster: Putative uncharacterized protein; n=1;
           Thermosipho melanesiensis BI429|Rep: Putative
           uncharacterized protein - Thermosipho melanesiensis
           BI429
          Length = 305

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 171 SH*NHQNLIMVFNV*VQSNYFSFEYQVSSQRNISRLLRNI-FLNLSSIVLVTRV--VFHY 341
           SH N +N++MVF+   +   F F Y +   +N   + +N   LN  ++   +    +  Y
Sbjct: 217 SHPNPENILMVFDRLSEGKKFYFPYYIVFDKNAKYIFKNSKVLNFQNVYFHSPADELIIY 276

Query: 342 GSPSN*SKLLIPNNSTNW 395
            S S  +K++  +N  +W
Sbjct: 277 LSKSKGAKIISKDNFRDW 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,560,246
Number of Sequences: 1657284
Number of extensions: 8372381
Number of successful extensions: 17472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17472
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)