Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   3.8  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   5.1  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    25   5.1  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   5.1  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.7  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.7  

>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 285 SAIIERYFSGKTLDIRMKNNLIVLI 211
           S+II R+    TLDI++K NL+ LI
Sbjct: 488 SSIIYRFPDFSTLDIKIKLNLVRLI 512


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -1

Query: 492 GCPTLFAGKRY---CVRQNEQ 439
           G PTLF+ KRY    +RQNEQ
Sbjct: 235 GMPTLFSVKRYSDALLRQNEQ 255


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 242 ISSVFPEKYLSIIAEYIFKSLFNRFSYTCSI 334
           ISS+F + YLSI+A    + +     YT  +
Sbjct: 118 ISSIFEQNYLSILASSALEIISAEHKYTAHL 148


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
 Frame = +2

Query: 242 ISSVFPEKYL-----SIIAEYIFKSLFNRFSYTCSISLRVPF*LIEI----TYS**QYEL 394
           I S+ PEK L      ++A ++   LF  F  TC I+  VPF +I++    TYS  +   
Sbjct: 432 IRSITPEKRLMRRVNGLLAVFV---LFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGF 488

Query: 395 VVG-CLVS 415
           ++G C+VS
Sbjct: 489 MLGTCIVS 496


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 224 KLFFIRISSVFPEKYLSIIAEYIFKSLFNRF 316
           +L+F +++ +   KY   IAE+ F  +++RF
Sbjct: 498 RLYFCKLAKLLLRKYPLDIAEHQFALVYSRF 528


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 471 GKRYCVRQNEQDGGTYPRGLTRHPT 397
           GKRYC+  N+     + R LT  PT
Sbjct: 903 GKRYCIMLNQYVLSKHQRQLTSLPT 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,007
Number of Sequences: 5004
Number of extensions: 36926
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)