Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0050 + 19631164-19631987,19632103-19634023                       28   5.1  
11_08_0064 - 28127955-28128860                                         27   8.9  
11_01_0080 - 619886-619979,620298-620815                               27   8.9  

>11_06_0050 + 19631164-19631987,19632103-19634023
          Length = 914

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 217 YNQIIFHSNIKCLPREIS 270
           +NQIIFHS  KC P  +S
Sbjct: 336 FNQIIFHSEDKCHPYHLS 353


>11_08_0064 - 28127955-28128860
          Length = 301

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 497 LTAVLLFLPESVTASGKTSRMVV 429
           L AV++FLP   TA+GKT ++ V
Sbjct: 14  LVAVVVFLPCLATATGKTGQIAV 36


>11_01_0080 - 619886-619979,620298-620815
          Length = 203

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 486 PTLFAGKRY---CVRQNEQDGGTYPRGLTRHPTTSSYCY 379
           P L   K Y    V  N++    Y   L  HPTTS++C+
Sbjct: 83  PNLNCSKGYDAMAVSINQEPDCLYVLNLRHHPTTSNHCF 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,175
Number of Sequences: 37544
Number of extensions: 204698
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)