Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   4.0  
SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)                 27   9.2  

>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 376  LITVRTGGRVSCKPARVGTTILLVLPDAV-TLSGK 477
            LI +  GGRV  +  R+    L+V PD V +L GK
Sbjct: 916  LINIEAGGRVEARSLRMHAESLVVDPDGVLSLDGK 950


>SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)
          Length = 564

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -2

Query: 482 LFLPESVTAS----GKTSRMVVPTRAGLQDTLPPVRTVIRN 372
           LF+PE+V  S    GKT     P R G+QD    V   + N
Sbjct: 10  LFIPENVVFSWIVAGKTDEHTKPNRQGIQDLRSSVYPNLEN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,925
Number of Sequences: 59808
Number of extensions: 252955
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)