Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical
           protein T09E11.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 322 VTKTIEERFKNIFRNNREIFLW 257
           +TKT    + +IF+NNREI +W
Sbjct: 283 LTKTPALLYNSIFQNNREILVW 304


>Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 123 VKLEVSIHAR*VVSYNYDLFLFKTITSE 40
           V ++  IHAR  +SYN  L+L  TI S+
Sbjct: 169 VWIDAGIHAREWISYNVALYLIYTIVSQ 196


>Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 123 VKLEVSIHAR*VVSYNYDLFLFKTITSE 40
           V ++  IHAR  +SYN  L+L  TI S+
Sbjct: 169 VWIDAGIHAREWISYNVALYLIYTIVSQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,015
Number of Sequences: 27780
Number of extensions: 198884
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)