Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30493
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.46 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   10.0 

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 430 YLPARAYKTPYHQFVLLLGISNF 362
           +L  ++ +TP + FV+ L ISNF
Sbjct: 77  FLSTKSLRTPSNLFVINLAISNF 99


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 430 YLPARAYKTPYHQFVLLLGISNF 362
           +L  ++ +TP + FV+ L IS+F
Sbjct: 43  FLSTKSLRTPSNLFVINLAISDF 65


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 348 GTRNEILHV*LKRLKRDLKIYSAIIERYFSGKTLDIRMKNN 226
           GTR + + +  +  K  ++IY  +I  + SG   D     N
Sbjct: 92  GTREQFIDMVARCNKAGVRIYVDVIMNHMSGDRNDAHGTGN 132


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 294  LNLSSIVLVTRVVFHYGSPSN 356
            L++ +I +   +VFH G P+N
Sbjct: 986  LSVPNIFVKDVLVFHQGQPTN 1006


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 SGKTLDIRMKNNLI 220
           SGK   IRMK+ LI
Sbjct: 103 SGKPFQIRMKHGLI 116


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 222 SNYFSFEYQVSSQRNISRLLRNIFLNLSSIVLVTRVV 332
           +N   F+Y      N ++ L +I  N+ + +   R+V
Sbjct: 22  TNVLDFDYYFYDYSNRTQALESIIANIPTWLSFIRIV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,036
Number of Sequences: 438
Number of extensions: 2635
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)