Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30492
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.077
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.077
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.3  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   5.1  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   6.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.7  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   6.7  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   8.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 25/97 (25%), Positives = 45/97 (46%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTP 249
           +P + T    S++TI+SS P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 250 INFGSRAPRTSSVIVSQLSSDLSSPKTRLSLCTSATV 360
           + + S    +S+  +S  +   S+P T  +  TS +V
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 597


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 260
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 261 LQGSKD 278
            +  K+
Sbjct: 170 SKYIKE 175


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 102 QLYNSVVVADYDSAVEKSKHLYEEKKS 182
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 VSQLSSDLSSPKTRLSLCTSATV 360
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 401 AIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETITDDVLGALE 261
           A++A  +I   QS+  A+V  LN+ F   KSE+  +  T  + G L+
Sbjct: 800 ALIAAQLICIFQSK--AIVTSLNKSFMSPKSEVRIKVFTTLIFGQLD 844


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 174 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 266
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 262 SRAPRTSSVIVSQLSSDLSSP-KTRLSLCTSATVS 363
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPITTVRLKRA-SIYTRRRRAKSSQM**TN*YETTR*TAWST 246
           +PTS  TF  S F   S LP ++     + S         SS    T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 247 PINFGSRAPRTSSVIVSQLSSDLSS 321
           P++  S  P + S   S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = +1

Query: 76  TSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPIN 255
           T LT+   ++ T ASS P+T+V    A+       A S+ +   N   +T  ++ +   N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410

Query: 256 FGSRAPRTSSVIVSQLSSDLSSPKTRLSLCTSATVS 363
             S  P TSSV  + LSS  S+  T  S    ++V+
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLSSVN 445


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 347 VHKLNRVFGEDKSELNWETITDDVL 273
           +H +     EDKS+L +ETI D VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 485 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 351
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 362  ETVALVHKLNRVFGEDKSELNWETITDDVLGALEPKL 252
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPIT-TVRLKRASIYTRRRRAKSSQM-----**TN*YETTR* 231
           +P +   F   S + ASSLPIT +  L   ++++  + ++SSQ        T  Y T+  
Sbjct: 463 VPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTS-- 520

Query: 232 TAWSTPINFG---SRAPRT---SSVIVSQLSSDLSSPKTRLSLCTSATVS 363
           + ++TPI      S  P T   SS   S LSS++++   + S  +S+  S
Sbjct: 521 SNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNSS 570


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 348 KRDGLALTLSNDVQGDDGRPAYGD 419
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 233
           LE  L +  +VA   S++EKSK LY+   K ++  +VV    R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,725
Number of Sequences: 5004
Number of extensions: 31102
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)