Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30492
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.85 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.85 
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.1  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   4.6  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   4.6  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   4.6  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 239
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 239
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 186 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 362
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 186 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 362
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 417 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 417 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9    PXMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 176
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 177  KSEVITNVVNKLIRNNKMNCMEYAY 251
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9    PXMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 176
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 177  KSEVITNVVNKLIRNNKMNCMEYAY 251
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 126 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 299
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 300 VEFRLIFA 323
           ++    FA
Sbjct: 88  IDMDAYFA 95


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 234 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 323
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 229 ILLFRISLFTTFVMTSLFFSSYK 161
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 36  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 185
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,641
Number of Sequences: 27780
Number of extensions: 178190
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)