Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30492
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.11 
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    29   1.9  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   3.2  
At4g28590.1 68417.m04089 expressed protein                             27   5.7  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   5.7  
At1g59077.1 68414.m06670 hypothetical protein                          27   5.7  
At1g58766.1 68414.m06659 hypothetical protein                          27   5.7  
At5g63450.1 68418.m07965 cytochrome P450, putative                     27   7.5  
At5g45460.1 68418.m05585 expressed protein                             27   7.5  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.5  
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    27   7.5  
At1g20410.1 68414.m02545 expressed protein                             27   7.5  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   7.5  
At5g47690.1 68418.m05887 expressed protein                             27   9.9  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   9.9  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    27   9.9  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 3   DAPXMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKS 182
           D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K  
Sbjct: 155 DLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMG 214

Query: 183 EVITNV 200
            +  N+
Sbjct: 215 SIAPNL 220


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
 Frame = +3

Query: 180 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 350
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY 
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320

Query: 351 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
            +G+ ALT+  D       PA  D  D       +K   L+E++ +  +I  TE N
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEEN 371


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
 Frame = -2

Query: 455 LPADSRACLVLAVAVGRSAIVA--------LNIIAQRQSETVALVHKLNRVFGEDKSELN 300
           LP D  +CL +A++ G  A+          LN + Q +S+  A+    N      +SE +
Sbjct: 488 LPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDS 547

Query: 299 WETITDDVLG 270
            ET+T+ +LG
Sbjct: 548 TETVTEAILG 557


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 344 HKLNRVFGEDKSELNWETITDD 279
           H +  V G+D SE++WE   DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 200
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 420 GKDKTSPRVSWKLIALWENNKVYFKILNTERN 515
           G+D TS  ++W    L +N+ V  KIL+  RN
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRN 337


>At5g45460.1 68418.m05585 expressed protein
          Length = 703

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +3

Query: 60  YAADSDVPNDILEEQLYNSVVVADYDSAV----EKSKHLYEEKKSEVITNVVNKLIRNNK 227
           +A   ++P D   E+L   V   DYD ++      ++  Y+E K E I    ++  + N 
Sbjct: 611 WALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNH 670

Query: 228 MNCMEYAYQLWLQGSKDIVRDCF 296
           +   + +  L  Q     VR C+
Sbjct: 671 LRLHDVSPDLATQSD---VRGCW 690


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 110 VKLLLQNVVRDVGICSIQRCH 48
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 271 PRTSSVIVSQLSSDLSSPKTRLSLCTSATVS 363
           PR  +   S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g20410.1 68414.m02545 expressed protein
          Length = 504

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 27  IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
           I I+CL +  L    SDV  ++++    +S  VA     V++ +H ++    EV  +V +
Sbjct: 97  ICIVCLGI--LQFVFSDVKKELVKSDS-SSDYVARITDLVKQDRHEFDSFGLEV--SVPS 151

Query: 207 KLIRNNKMNCM----EYAYQLWLQGSKDIVRDCFPV 302
            ++ N +        +Y+ ++WLQ  K  V+D   V
Sbjct: 152 TIMENERALLSYLKGKYSTEVWLQRDKISVKDALKV 187


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 46   SWHLCMLQIPTSLTTFWRSSFTIASSLPITTV 141
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +3

Query: 87  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 218
           D+LE++ Y   V+       + +  +YE ++SEV+  + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -2

Query: 410 GRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETITDDVLGALEPKLIGVLHAV 231
           GR A + +++ +     T +   +  RVF   ++E+N       V G   PK +GV+  V
Sbjct: 167 GRDASI-VSVSSGHSRGTFSSGKRSKRVFAPMENEIN-----SPVSGFYPPKAVGVVERV 220

Query: 230 HLVVSY 213
           + +VSY
Sbjct: 221 NSLVSY 226


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 33  ILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
           +LC+   +++   DS     +  + + + +V  DYD+ V+ S  +  E+ S ++TN V+
Sbjct: 405 LLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLTNGVD 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,270,504
Number of Sequences: 28952
Number of extensions: 165498
Number of successful extensions: 714
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)