Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30490
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   2.9  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   3.8  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    25   5.1  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   6.7  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   6.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -2

Query: 389 LPPSTLPRGQAHPLF----L*ARQAPSCG 315
           LPPS LPR   HPL       A+Q+PS G
Sbjct: 52  LPPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 241 TLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGC 357
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 74  IAHCAAKNVVRACWKTGPATW 12
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 272 TVIWGHQKTGLTILNHRKGLVVPTKTRD 355
           T I G +  G     +RKGL+VP+ T D
Sbjct: 51  TTIGGTRIIGRLTCGNRKGLLVPSSTTD 78


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +1

Query: 415 VRGNKADYDEWAADGNEGW----SFEEVLPYFKKSES 513
           V GN AD   W  DG   W     +  VL + KK +S
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKS 146


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 364 AKRIPCFCRHDKPLPVVQYGKPSLLMSPYYCSKVAV 257
           A  +PC   +D P PV +Y    + +S    SK  V
Sbjct: 21  ASLLPCHISYDGPAPVFEYFHDKIQISNNTHSKTTV 56


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 205 WKVLLVEAGGN----PTLATEIPQPYYSNMGTSEDWAYH 309
           W +L    G N    P   +E P     N+G S +WAY+
Sbjct: 516 WSMLGSAVGQNGNVGPRQISEEPMSIIFNLGISNNWAYY 554


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 MTSSSSELVPPDRLSPIV 187
           +  +S E VPPD L P+V
Sbjct: 381 LAQASHEFVPPDALEPLV 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,887
Number of Sequences: 5004
Number of extensions: 40970
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)