Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30490
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 40 0.002
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.015
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 36 0.026
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.14
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 32 0.31
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.31
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 31 0.42
03_05_0039 - 20125473-20126222 30 1.3
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 5.1
02_05_1281 - 35439728-35439757,35439758-35439833,35440230-354403... 28 5.1
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 27 8.9
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819... 27 8.9
08_02_1383 + 26594304-26594386,26595927-26595972,26596108-265962... 27 8.9
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 27 8.9
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 39.5 bits (88), Expect = 0.002
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 4/151 (2%)
Frame = +1
Query: 40 ALTTFLAAQCAI--AGD--HLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDW 207
A T+F+A + AGD + + DA + YD+I LS+ +
Sbjct: 15 AATSFVAMLACVQAAGDESYTFMKDAVQSP-QVSYYDYIIVGGGTAGCPLAATLSQ--RF 71
Query: 208 KVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGG 387
+VLL+E GG+P I NM D T P A R G R +VLGG
Sbjct: 72 RVLLLERGGSPYDDERI-----GNMTRFADTLSDTSPSSPAQRFVSEDGVINSRPRVLGG 126
Query: 388 SSSINLMFYVRGNKADYDEWAADGNEGWSFE 480
S IN FY R + DE+ GW E
Sbjct: 127 GSCINAGFYTRAS----DEYVR--GLGWDLE 151
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.015
Identities = 28/80 (35%), Positives = 36/80 (45%)
Frame = +1
Query: 187 LSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWP 366
LSE S +VLL+E GG P + Y+ D T P+ A R G
Sbjct: 75 LSERS--RVLLLERGGLPYGNRNVSSEYHF-----ADALADTSPRSPAQRFVSEDGVVNA 127
Query: 367 RGKVLGGSSSINLMFYVRGN 426
R +VLGG S +N FY R +
Sbjct: 128 RARVLGGGSCLNAGFYTRAS 147
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 35.5 bits (78), Expect = 0.026
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +1
Query: 130 NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSE---DW 300
+Y++I LSE S +VLL+E GG P Y+NM + + D
Sbjct: 53 SYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGGLP----------YANMSSEQHFTDA 100
Query: 301 AYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 426
T P A R G R +VLGG S +N FY R +
Sbjct: 101 LADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRAS 142
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/98 (29%), Positives = 42/98 (42%)
Frame = +1
Query: 133 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 312
YD+I LS+ +KVLL+E GG+P I ++ ++D
Sbjct: 50 YDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHLENFHICLADDSP--N 105
Query: 313 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 426
P +G G R KVLGG +S+N FY R +
Sbjct: 106 SPSQGFI---STDGVINARAKVLGGGTSVNAGFYSRAD 140
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.9 bits (69), Expect = 0.31
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = +1
Query: 205 WKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 384
+KVLL+E GG+P + ++G S + P + G R +VLG
Sbjct: 73 YKVLLLERGGSPYGNRNVSYMENFHIGLS-----NMAPDSASQAFISTDGVINARARVLG 127
Query: 385 GSSSINLMFYVRGNKADYDE--WAAD-GNEGWSFEE 483
G + IN FY R + E W D NE + + E
Sbjct: 128 GGTCINAGFYSRASSNFIQEVGWDEDLVNESFPWVE 163
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.31
Identities = 29/96 (30%), Positives = 38/96 (39%)
Frame = +1
Query: 133 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 312
YD+I LSE ++VLL+E GG+P + NM D T
Sbjct: 43 YDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSPYDDARV-----LNMAHFADVLADT 95
Query: 313 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVR 420
+ R G R +VLGG S IN F+ R
Sbjct: 96 SGASPSQRFVSEDGVINARPRVLGGGSCINAGFFTR 131
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 31.5 bits (68), Expect = 0.42
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +1
Query: 100 DATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSN 279
DA + E+ YD+I L+ +VL++E GG P E P P +
Sbjct: 45 DAAETAAEEA-YDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAPA---EFP-PLATA 99
Query: 280 MGTSEDWAYHTEPQEGACRAY---KNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWA 450
G A E A G R +VLGG++SIN FY R + D+
Sbjct: 100 GGFVRTLAMADPAPESDAPAQTFASEDGVPNVRARVLGGATSINAGFYSRAH-PDWFRSH 158
Query: 451 ADGNEGWSFE 480
+G E +++
Sbjct: 159 GEGGEAMNWD 168
>03_05_0039 - 20125473-20126222
Length = 249
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 349 KGCAWPRGKVLGGSSSINLMFY 414
+GCA GKVLGGS S+ FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 331 CRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEVL 489
CRA C+ P G + ++M Y +G+K W + EGW EV+
Sbjct: 120 CRAGGEVFCSAPLLFFTGSAPGFSVMSYRKGSKV----WVEEKGEGWVEAEVV 168
>02_05_1281 -
35439728-35439757,35439758-35439833,35440230-35440345,
35441867-35441928,35441947-35442112
Length = 149
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 378 ARRKQQHQFDVLRSG*QGRLRRMGCRWKRRL 470
A+RK+QH+FD+ + + +R + CR+ L
Sbjct: 8 AKRKKQHEFDLQSTTDRSYIRLLPCRFSSHL 38
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -3
Query: 394 CCF--RRAPYHVAKRIPCFCRHDKPLPVVQYGKPSLL 290
CCF RR Y++ ++ CF P KP+ L
Sbjct: 375 CCFHGRRKQYYLGSKVTCFGSEQHCAPKYSINKPAWL 411
>10_07_0145 -
13381172-13381334,13381468-13381665,13381753-13381952,
13382036-13382149,13382255-13382391,13382501-13382611,
13383793-13384060,13385034-13385132,13385277-13385471
Length = 494
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -1
Query: 480 LETPAFVSIGSPFVVIGLVTPNVKHQIDAAASAEHLTTWPSASL---VFVGTTSPFLWFS 310
+E PA P V++ + N K + A TWP + V +T PF+ FS
Sbjct: 41 VEAPAPAPAEFPMVLVQIPMYNEKEVYKLSIGAACALTWPPDRIIIQVLDDSTDPFVKFS 100
Query: 309 MV 304
+V
Sbjct: 101 LV 102
>08_02_1383 +
26594304-26594386,26595927-26595972,26596108-26596222,
26596645-26596712,26596814-26597440,26597527-26597631,
26597715-26598062
Length = 463
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 362 GHVVRCSAEAAASI*CFTFGVTRPITTNGLPMETK 466
GH VRC AE + C V R ++GL +E K
Sbjct: 322 GHPVRCDAERLRLVRCLEAAVERR-ASDGLELEVK 355
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 245 WQPRYRNLTTVIWGHQKTGLTILNHRKGLVVPTKTRDALGHV 370
W ++ + K + +++ R+GL +P + +++LGHV
Sbjct: 463 WNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHV 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,735
Number of Sequences: 37544
Number of extensions: 319538
Number of successful extensions: 915
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -