Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30490
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 6e-21
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 27 6.9
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 27 6.9
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13) 27 9.2
SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6) 27 9.2
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27) 27 9.2
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 97.5 bits (232), Expect = 6e-21
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Frame = +1
Query: 133 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGTSE-DWAY 306
+D++ NRLS D KVLL+EAG T +P N+ + +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223
Query: 307 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEV 486
HT PQ + N+ PRG+V GGSSS+N M Y+RG+ DYD W +G +GWS+ +
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYADC 279
Query: 487 LPYFKKSES 513
LPYF+KS++
Sbjct: 280 LPYFRKSQT 288
>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 83 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 214
+TY P LPT F KI T+TSS+++ D I+L K C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 118 LEDP--NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGT 288
LEDP +YDFI NRL+ +VL++EAG ++ IP +S +
Sbjct: 4 LEDPLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAG-FSKLLV 62
Query: 289 SEDW 300
+ DW
Sbjct: 63 NPDW 66
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +1
Query: 325 GACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEEVLPYFKK 504
G + +K+ GC+W + G SS +N+ + A EW E + Y+
Sbjct: 1332 GLTKNWKSNGCSWIKTLQTGPSSPVNVKGQAESSIAIRIEWDKPLQPNGIITEYIIYYGP 1391
Query: 505 SE 510
+E
Sbjct: 1392 AE 1393
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 481 PRNSSLRFHRQPIRRNRPCYPERKTSN 401
PR+SS F +QPI R C PE KT++
Sbjct: 565 PRDSSDEF-KQPITRQLECKPEVKTAH 590
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -1
Query: 495 VGQDFLETPAFVSIGSPFVVIGLVTPNVKHQIDAAASAEHLTTWPSASLVFVGTTSPFL 319
V QD+ +TP+ V+ G+P ++ G PN ++ + A + L W ++ T+PF+
Sbjct: 1266 VNQDYTDTPSNVNDGAP-LLEGNKIPN-ENNVPDAEEDDELLAWEGLNM----ETTPFI 1318
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -3
Query: 493 RARLPRNSSLRFHRQPIRRNRPCYPERKTSN*CCCFRRAPYHVAKRIPCFCRHDKPLPVV 314
R LP NS+ R H+ P R P Y + + P + R+ RH PLP
Sbjct: 78 RTPLPANSTRRVHQSP-RNKLPAYTSPRVHQ--SPRNKLPAYTTPRVLHSPRH--PLPA- 131
Query: 313 QYGKPSLLMSP 281
Y P +L SP
Sbjct: 132 -YFTPRVLHSP 141
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 265 PYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRG-KVLGGSSSINLMFYVRGNK 429
P N+ S A H E ++ AC KG P+G K++ S+ ++ +G K
Sbjct: 497 PTPQNIPASAHVATHVEGRKRACVLCSKKGKTTPKGYKIMSARSAKSVSVVKKGRK 552
>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1134
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 223 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 312
+A + T ++ +P + GTSE+W+Y T
Sbjct: 41 QANYSSTKVEKVRRPTITTAGTSEEWSYFT 70
>SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)
Length = 372
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 223 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 312
+A + T ++ +P + GTSE+W+Y T
Sbjct: 41 QANCSSTKVEKVRRPTITTAGTSEEWSYFT 70
>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 223 EAGGNPTLATEIPQPYYSNMGTSEDWAYHT 312
+A + T ++ +P + GTSE+W+Y T
Sbjct: 41 QANCSSTKVEKVRRPTITTAGTSEEWSYFT 70
>SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)
Length = 638
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 322 EGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEE 483
+G C++ +W LG ++ + L+ GN D ++ AADG + S ++
Sbjct: 478 DGYCQSETMGKASWDVSAYLGRTAHVRLVDASSGNWDDVNDGAADGADDDSCDD 531
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.133 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,033
Number of Sequences: 59808
Number of extensions: 332491
Number of successful extensions: 1049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -