Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30490
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   116   1e-28
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  116 bits (280), Expect = 1e-28
 Identities = 60/158 (37%), Positives = 85/158 (53%)
 Frame = +1

Query: 40  ALTTFLAAQCAIAGDHLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLL 219
           AL  F  A   + G+      ++   + D +YDFI             RLSE+S+WKVLL
Sbjct: 40  ALLNFFVATSPVIGEPCQRVHSSR--IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLL 97

Query: 220 VEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSI 399
           +EAG +     EIP      +G   DW Y+T  +  AC +     C WPRGK LGG++  
Sbjct: 98  LEAGPDEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLS-TGGSCYWPRGKNLGGTTLH 156

Query: 400 NLMFYVRGNKADYDEWAADGNEGWSFEEVLPYFKKSES 513
           + M Y RG++ DY+ W   G  GWS++EV+PY+ KSE+
Sbjct: 157 HGMAYHRGHRKDYERWVQQGAFGWSWDEVMPYYLKSEN 194


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 468 AFVSIGSPFVVIGLVTPNVKHQIDAAASAEHLTTW 364
           AF+    PF V+ LV P +K+     A    L  W
Sbjct: 380 AFIVCWLPFFVLALVRPFLKNPDAIPAFLSSLFLW 414


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 149 SELVPPDRLSPIVLAKYL 202
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 RHDKPLPVVQYGKPSLLMS 284
           RH +P+P  +Y   +LL S
Sbjct: 397 RHSRPVPAKKYDCVTLLFS 415


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 149 SELVPPDRLSPIVLAKYL 202
           +E++PP  L+  +L KYL
Sbjct: 299 AEIIPPTSLAIPLLGKYL 316


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 RHDKPLPVVQYGKPSLLMS 284
           RH +P+P  +Y   +LL S
Sbjct: 397 RHSRPVPAKKYDCVTLLFS 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,463
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)