Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30489
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 86 2e-17
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 77 8e-15
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 73 2e-13
09_02_0115 + 4413714-4414475 32 0.31
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 2.2
12_02_0312 + 17395716-17398112 29 2.9
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 3.9
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 27 6.8
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 85.8 bits (203), Expect = 2e-17
Identities = 51/144 (35%), Positives = 75/144 (52%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 442
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 443 ALFQLMEPTVTIRVRQTDKALVES 514
L +L EP V +R R+ D VES
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVES 144
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 77.0 bits (181), Expect = 8e-15
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 439
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 440 ----------QALFQLMEPTVTIRVRQTDKALVES 514
Q+L +L EP+V +R R+ D+ VES
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVES 155
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 442
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 443 ----------ALFQLMEPTVTIRVRQTDKALVES 514
+L +L EP V +R R+ D+ LVES
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVES 155
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 412 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 510
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 311 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 445
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 284 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 427
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 430 TYCAGSLPAHGTHCHHPRPSNRQGSGG 510
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 362 QVHYVRDLHELSVPSDELGSACSKIGSSSEVQP 264
Q H + E S P L S+C +I SS+ P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,944
Number of Sequences: 37544
Number of extensions: 230590
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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