Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30489
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 90 9e-19
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 87 7e-18
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 75 2e-14
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 2.5
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 2.5
At5g55540.1 68418.m06919 expressed protein 28 3.2
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 4.3
At2g41990.1 68415.m05194 expressed protein 28 4.3
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T... 28 4.3
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 27 5.7
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 27 5.7
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 27 5.7
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 27 7.5
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 89.8 bits (213), Expect = 9e-19
Identities = 52/144 (36%), Positives = 75/144 (52%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++D DV +QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 442
I S LN +R+KVL+ ++D V + D+A K L V +D Y +LL LIVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 443 ALFQLMEPTVTIRVRQTDKALVES 514
L +L EP+V +R R+ D LVE+
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEA 144
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 87.0 bits (206), Expect = 7e-18
Identities = 49/144 (34%), Positives = 75/144 (52%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 442
I S LN +R+K L+ ++D V + D A K L V D Y +LL +LI++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 443 ALFQLMEPTVTIRVRQTDKALVES 514
+L +L EP+V +R R+ DK +VES
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVES 144
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 75.4 bits (177), Expect = 2e-14
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Frame = +2
Query: 83 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 262
++DAD QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 263 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSELL 424
I S LN +R+KVL+ ++D V + +EA K+L +V + Y LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 425 VTLIVQALFQLMEPTVTIRVRQTDKALVES 514
LIVQ L +L EP V +R R+ D +VES
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVES 150
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 25 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 126
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 25 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 126
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 365 RQVHYVRDL-HELSVPSDELGSACSKIGSSSEVQPASPSFHSI 240
R+ H + +L EL VP+DE A + + ++E++ PSF I
Sbjct: 1084 RRYHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFGGI 1126
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 374 KRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVES 514
K AEV ++ + + +V+ +A+ Q M+P VTI + ++K ++S
Sbjct: 604 KTPAEVEEELEYWLRFIVSNSRKAIQQCMKPNVTIVLTHSEKINLQS 650
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 317 LKVLKVREDHVRNVLDEARKRLAEV 391
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At2g41990.1 68415.m05194 expressed protein
Length = 297
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 392 ALQPGACELRQVHYVRDLHELSVPSDELGSACSKIGSSS--EVQPASPSFHS 243
AL P +R ++YV+ V GS CS +GS + SP HS
Sbjct: 16 ALSPPRSAIRPLYYVQSPSNHDVEKMSFGSGCSLMGSPTHPHYYHCSPIHHS 67
>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
(TOM3) identical to tobamovirus multiplication protein
(TOM3) GI:15425641 from [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -3
Query: 397 LWHFSQALASFVKYITYVIFTNFQYLQTSLVQHV 296
++HF + + V+ + +V N Q++Q ++QH+
Sbjct: 85 VFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHI 118
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 398 PLALQPGACELRQVHYVRDLHELSVPSDELGSAC 297
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 398 PLALQPGACELRQVHYVRDLHELSVPSDELGSAC 297
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 374 CELRQVHYVRDLHELSVPSDELG-----SACSKIGS 282
C + + Y +H+L +P+DE+ SAC+ I S
Sbjct: 430 CTVETLEYFHQMHKLDLPTDEVSLSSVISACASISS 465
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
family protein low similarity to KbaY
(tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
GI:8895753; contains Pfam profile PF01116:
Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 401 CPLALQPGACELRQVHYVRDLHELSVPSDE 312
CP LQ G + VHYV D L VP+ E
Sbjct: 764 CPFFLQGGRYTIDDVHYVADSDRL-VPAGE 792
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,560,014
Number of Sequences: 28952
Number of extensions: 164918
Number of successful extensions: 453
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -