Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30488
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    30   0.24 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    28   0.72 
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.7  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   6.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   8.9  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 350 LTNLMKKMLSYGQYNMDKYTYV 415
           LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = -3

Query: 412 VGVLVHVVLAIAQHFLHQVGQVDNFSIVANNF*ATEDQTGEVFNVLRLLQAYNSAVTTLD 233
           V +L+ VVL      L     V N   +   F + E  TGEV   L  L    S + TLD
Sbjct: 299 VPILIFVVLQARPAHL-----VSNIQYI-QRFRSPEKLTGEVMYYLSTLMGAMSFIETLD 352

Query: 232 LSSKDTLSDHHFN 194
            SS  T+++  FN
Sbjct: 353 CSSL-TITEEEFN 364


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 365 KKMLSYGQYNMDKYTYVPTSLDMYTTCLRDPVFWMIMKRVCNIF 496
           K++LS   Y  + Y+   + L MY   +R    ++ +K + NIF
Sbjct: 30  KRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKALSNIF 73


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 448 PRSCLLDDHETSLQHLHRFQEHA 516
           P+  +L  HE S++HL R  E A
Sbjct: 133 PKEKILTAHEASVRHLRRLTESA 155


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 514 HVLENGEDVANSFHDHPEDR 455
           H++EN   +A+ FH+  E +
Sbjct: 28  HIVENSSPIASKFHEFDEQK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,412
Number of Sequences: 5004
Number of extensions: 37118
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)